PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA20390.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

MIKC_MADS

Protein Properties

Length: 230aa MW: 26452.8 Da PI: 9.4441

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA20390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+gi+KKA EL vLCdaev++i+fsstgk+ ey+s OVA20390.1 9 KRIENATNRQVTYSKRRAGIMKKARELTVLCDAEVSLIMFSSTGKFSEYIS 59 79***********************************************86 PP
2	K-box	95.6	7.9e-32	74	172	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq+++g +l+++++es+q++l+kLk+ ++ L+re+R+++GedLe+L++ eL+ Leq+Le+slk +R++K+++l++q+++ +kk +++ e+n++L +++e OVA20390.1 74 YQQATGINLWNSHYESMQNNLNKLKEINNRLRREIRQRMGEDLEDLTMVELRGLEQNLESSLKVVRERKYHVLTTQTDTYKKKIRSHTETNHNLLREFE 172 7899999***************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MGRGKIEIKR IENATNRQVT YSKRRAGIMK KARELTVLCD AEVSLIMFSS TGKFSEYISP 60 SSSLNPTKRI FDRYQQATGI NLWNSHYESM QNNLNKLKEI NNRLRREIRQ RMGEDLEDLT 120 MVELRGLEQN LESSLKVVRE RKYHVLTTQT DTYKKKIRSH TETNHNLLRE FEGGDHVDPH 180 YALANNQEGD YEAALELANG GPNIFAFRLQ PSQPNLHDGG GYGSHDLRLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-65	MIKC_MADS family protein