PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA20029.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 449aa MW: 48877.9 Da PI: 7.5931

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA20029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	51	76	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+F+H+ OVA20029.1 51 PGEPDCIYYLRTGLCGYGNNCRFNHP 76 5789*********************8 PP
2	zf-CCCH	39.1	1.3e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ OVA20029.1 95 QPDCQYFMKTGTCKFGATCKYNHPR 119 789********************96 PP
3	zf-CCCH	36.8	6.5e-12	142	164	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f++rtG Ck+G CkF+H++ OVA20029.1 142 SCPFYMRTGSCKFGIACKFHHPQ 164 6********************97 PP
4	zf-CCCH	36.9	6e-12	288	313	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++Ck++H++ OVA20029.1 288 EQPECQYYMKTGRCKFGPTCKYHHPR 313 5799********************96 PP
5	zf-CCCH	33.1	9.6e-11	334	358	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C f+ +G+CkyG+ CkF H+ OVA20029.1 334 GQTVCTFYKLYGICKYGSACKFDHP 358 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MPDNWQVQNG VSTSSIATTD KLEEAMWQLK IQTQEDQDGV ASHSAPYPDR PGEPDCIYYL 60 RTGLCGYGNN CRFNHPAYAG QAAQHRGELP ERAGQPDCQY FMKTGTCKFG ATCKYNHPRD 120 RYDAGQVPLN ILGLPMRQEE KSCPFYMRTG SCKFGIACKF HHPQPATLGA VLPVTGPTAY 180 GSAGSTVAPP SGFPYAGGLP AWSLPRAPSI SGPPMQGSQA YMPVVLSSSQ GLLPAQPGWS 240 TYMGTMTSVS STNVLGSNLV YTSKHQGESG SSGPVHSPSF PQFPERPEQP ECQYYMKTGR 300 CKFGPTCKYH HPREKITPLA TNSMGPYGLP LRPGQTVCTF YKLYGICKYG SACKFDHPLA 360 GFYNYGVSMP SLPLPDPPLI PYQRNSLPAR SSETSPSKSS RLPDQMKPDV PNAKQQNLDT 420 KAPEDPEQEP LSSTNPEPTS LETPLDQSD

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MPDNWQVQNG VSTSSIATTD KLEEAMWQLK IQTQEDQDGV ASHSAPYPDR PGEPDCIYYL  60
RTGLCGYGNN CRFNHPAYAG QAAQHRGELP ERAGQPDCQY FMKTGTCKFG ATCKYNHPRD  120
RYDAGQVPLN ILGLPMRQEE KSCPFYMRTG SCKFGIACKF HHPQPATLGA VLPVTGPTAY  180
GSAGSTVAPP SGFPYAGGLP AWSLPRAPSI SGPPMQGSQA YMPVVLSSSQ GLLPAQPGWS  240
TYMGTMTSVS STNVLGSNLV YTSKHQGESG SSGPVHSPSF PQFPERPEQP ECQYYMKTGR  300
CKFGPTCKYH HPREKITPLA TNSMGPYGLP LRPGQTVCTF YKLYGICKYG SACKFDHPLA  360
GFYNYGVSMP SLPLPDPPLI PYQRNSLPAR SSETSPSKSS RLPDQMKPDV PNAKQQNLDT  420
KAPEDPEQEP LSSTNPEPTS LETPLDQSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32930.1	8e-99	C3H family protein