PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA19406.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 729aa MW: 79272.6 Da PI: 6.3675

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA19406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg OVA19406.1 305 PCPDFRK-GACRRGDLCEYAHG 325 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MCGGPEPIQS SSSPSTAPSE EFKPPAKDMN HLTVETEDSF SNLLELAANN DLDGFKQLIE 60 RDASAVDEIG LWYGRQKGSK QMVLEHRTPL MVAATYGSVD VLNFILSLSE ADVNRSCGPD 120 KSTALHCAAS GGSVNADEVV KLLLLSGADP NSIDANGCRP ADVIVVSPKL PNLKISLEAL 180 LTNNGSFVTA TERNLRISTT ASNSNSSSPE NGSPSSVSDY ISSPTMKFND LPVSATSEKK 240 EYPIDPSLPD IKNSIYSTDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH 300 YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCMRR VCFFAHTSEE 360 LRPLYMSTGS AVPSPRSSAS AAAAMDMAAA MNLFPASPSS VSMMSPSPFA SPMSPSSNSI 420 SHSSLAWPQP NVPTLHLPGS NLQSSRLRSS LNARDITSDD YNMLQEVQQQ QLLNELSCFS 480 QQQRLGSSSL NIPIRTKSLT PSNLEDLFTA EISRSPRYAD QAASSGVFSP SHKSAVLNQF 540 QQQQSMLSPI NTNSFSPKNV DHTLLQASFA VPSPGRMSPR GMEPISPVNS RLPVFSQREK 600 HHQQLRSLSS RDLGSNSSAV VGSPVNNSWS KWGSPTGKLD WGVQGDELGR FRRSSSLEPG 660 HNGVEEPDLS WVQSLVKESP PEIKEKLVIP VSAPSSSGEG SSSNSQMESG DHSVIGVWLE 720 QMQLDQLVA

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MCGGPEPIQS SSSPSTAPSE EFKPPAKDMN HLTVETEDSF SNLLELAANN DLDGFKQLIE  60
RDASAVDEIG LWYGRQKGSK QMVLEHRTPL MVAATYGSVD VLNFILSLSE ADVNRSCGPD  120
KSTALHCAAS GGSVNADEVV KLLLLSGADP NSIDANGCRP ADVIVVSPKL PNLKISLEAL  180
LTNNGSFVTA TERNLRISTT ASNSNSSSPE NGSPSSVSDY ISSPTMKFND LPVSATSEKK  240
EYPIDPSLPD IKNSIYSTDE FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKFH  300
YSCVPCPDFR KGACRRGDLC EYAHGVFECW LHPAQYRTRL CKDGTSCMRR VCFFAHTSEE  360
LRPLYMSTGS AVPSPRSSAS AAAAMDMAAA MNLFPASPSS VSMMSPSPFA SPMSPSSNSI  420
SHSSLAWPQP NVPTLHLPGS NLQSSRLRSS LNARDITSDD YNMLQEVQQQ QLLNELSCFS  480
QQQRLGSSSL NIPIRTKSLT PSNLEDLFTA EISRSPRYAD QAASSGVFSP SHKSAVLNQF  540
QQQQSMLSPI NTNSFSPKNV DHTLLQASFA VPSPGRMSPR GMEPISPVNS RLPVFSQREK  600
HHQQLRSLSS RDLGSNSSAV VGSPVNNSWS KWGSPTGKLD WGVQGDELGR FRRSSSLEPG  660
HNGVEEPDLS WVQSLVKESP PEIKEKLVIP VSAPSSSGEG SSSNSQMESG DHSVIGVWLE  720
QMQLDQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein