PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA19081.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 457aa MW: 49838.2 Da PI: 8.5053 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.3e-09 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++ rtG C++G +C+F+H+p OVA19081.1 51 GEQDCTYYIRTGLCRFGMTCRFNHPP 76 6789********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 97 | 121 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OVA19081.1 97 QPECQYYLKTGTCKFGATCKFHHPR 121 799********************96 PP | |||||||
3 | zf-CCCH | 36.1 | 1.1e-11 | 143 | 167 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OVA19081.1 143 EKECAYYLRTGQCKFGNTCKFHHPQ 167 679********************97 PP | |||||||
4 | zf-CCCH | 38.4 | 2e-12 | 304 | 329 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ OVA19081.1 304 DQPECQFYMKTGDCKFGAVCRFHHPR 329 689*********************96 PP | |||||||
5 | zf-CCCH | 40 | 6.4e-13 | 349 | 375 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OVA19081.1 349 PGEPLCIFYSRYGICKFGPNCKFDHPM 375 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence |
MDYDTGIQMS RGTVVTEGSS LSPPLDDDTM WQLNLRSNET MESGPYPERP GEQDCTYYIR 60 TGLCRFGMTC RFNHPPNRKL AIAAARIKGG YPERIGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV LLNILGYPLR PNEKECAYYL RTGQCKFGNT CKFHHPQPSN TMVSLRGSPV 180 YPPVQSPTTP GQQSYPGGIT NWVSRASFIP SPRWQGPSSY APLILPQGVV PVPGWNAYAG 240 QLGSGSSSES QQQTSGNSHF YGTTRPSDTT SAGVQGTFSP YRSGSAPTGI YALQRENVFP 300 ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RLIPVPNCLL SPLGLPLRPG EPLCIFYSRY 360 GICKFGPNCK FDHPMGTFTY GLSASSSVDV PIVRRLLGSS SGPAALQLSS EGSVEAGSGK 420 PRRLSLSETR QMPSADEDID VEGPQTTSSI GPVASFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-161 | C3H family protein |