PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA18090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 874aa MW: 96004.9 Da PI: 5.0001 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.1 | 3.6e-09 | 108 | 135 | 1 | 27 |
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++G++C++aH++ OVA18090.1 108 WKTSLCSFFRRQSnDCSHGETCRYAHSE 135 8**********99*************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence |
MATVPENLNS SLAEIGNDES VMQNLNPPPG EIQSPNLQLT NGGDSVDQLQ LKPSNEESTE 60 EAPLKGEERE SVDEEIKPSK QESLDKRKRE GEEDVENGGE KGVRHPMWKT SLCSFFRRQS 120 NDCSHGETCR YAHSEEELRP RPDNSWDPTS ERAKKVMKLE NGDKIGTLDA REDVLMPDAF 180 VDSSDPSLDK CLVNLPKKWT SDNLRSFLDE QASWGVPFKT ARKKKGMTVG FVGFETADQV 240 KTAIEGINGK AIGNKHVKIA NVVPRPFEKK TTSVLPSEDP DASLSLNGSE DGDIVEKDDF 300 KVDGSVPRPR SVRDAVTPLA HMSYSDQLEH KKNSLAQTLK RLTRNARKAC PDGVSLPEWI 360 LKSREIGGLP CKLEGIVESP LANGYRNKCE FSVGYSVQGK PTVGFMLGNF REGVTAVEEP 420 VDCPNVSRIS CKFASIFQDY LQHSGLPVWN RINNTGFWRQ LTVREGRNPA QDFKIENFEA 480 NISEVLLMVQ ISSAGIDEEV ITKELQSMAL AFSQGASASS PPLPLTSLVV QDHRGISNVA 540 PADAPLNPLR IPKAESAAGE EAVDSALEGI HDYYIGNLRF CISPTAFFQV NTLAAEKLYS 600 LAGDWAGLGP DTLLFDVCCG TGTIGLTLAH RVGMVVGIEM NASAVSDANR NAEINNIKNC 660 RFVCAKAEDV MGSLLKEYLD VPPKQEEHLR VPESTDLEDA NVQEKSASNG KVDLESLNQE 720 SGDVKSESGC PQICQEEVKE PIQRSSDEDQ SKRIDTSMGQ YKDVVAIVDP PRAGLHPTVI 780 KALRTHPSLR RLVYISCNPE SLVANAIELC TPSSDNSDKG NKNNRGWRNR STAGLARQRA 840 KSMPNSEPFR PVKAMAVDLF PHTPHCETVM LLER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |