PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA18090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family C3H
Protein Properties Length: 874aa    MW: 96004.9 Da    PI: 5.0001
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA18090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.6e-09108135127
                 --S---SGGGGTS.--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                 +kt+lC+ff+r    C++G++C++aH++
  OVA18090.1 108 WKTSLCSFFRRQSnDCSHGETCRYAHSE 135
                 8**********99*************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    
MATVPENLNS SLAEIGNDES VMQNLNPPPG EIQSPNLQLT NGGDSVDQLQ LKPSNEESTE  60
EAPLKGEERE SVDEEIKPSK QESLDKRKRE GEEDVENGGE KGVRHPMWKT SLCSFFRRQS  120
NDCSHGETCR YAHSEEELRP RPDNSWDPTS ERAKKVMKLE NGDKIGTLDA REDVLMPDAF  180
VDSSDPSLDK CLVNLPKKWT SDNLRSFLDE QASWGVPFKT ARKKKGMTVG FVGFETADQV  240
KTAIEGINGK AIGNKHVKIA NVVPRPFEKK TTSVLPSEDP DASLSLNGSE DGDIVEKDDF  300
KVDGSVPRPR SVRDAVTPLA HMSYSDQLEH KKNSLAQTLK RLTRNARKAC PDGVSLPEWI  360
LKSREIGGLP CKLEGIVESP LANGYRNKCE FSVGYSVQGK PTVGFMLGNF REGVTAVEEP  420
VDCPNVSRIS CKFASIFQDY LQHSGLPVWN RINNTGFWRQ LTVREGRNPA QDFKIENFEA  480
NISEVLLMVQ ISSAGIDEEV ITKELQSMAL AFSQGASASS PPLPLTSLVV QDHRGISNVA  540
PADAPLNPLR IPKAESAAGE EAVDSALEGI HDYYIGNLRF CISPTAFFQV NTLAAEKLYS  600
LAGDWAGLGP DTLLFDVCCG TGTIGLTLAH RVGMVVGIEM NASAVSDANR NAEINNIKNC  660
RFVCAKAEDV MGSLLKEYLD VPPKQEEHLR VPESTDLEDA NVQEKSASNG KVDLESLNQE  720
SGDVKSESGC PQICQEEVKE PIQRSSDEDQ SKRIDTSMGQ YKDVVAIVDP PRAGLHPTVI  780
KALRTHPSLR RLVYISCNPE SLVANAIELC TPSSDNSDKG NKNNRGWRNR STAGLARQRA  840
KSMPNSEPFR PVKAMAVDLF PHTPHCETVM LLER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein