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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OVA18043.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 1580aa MW: 176173 Da PI: 5.3792 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 11.6 | 0.00089 | 1465 | 1490 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+ C+ C +sF+++ +L H r+ +
OVA18043.1 1465 FACNleGCRMSFKTRAELLMHKRNrC 1490
789999****************9876 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1580 aa Download sequence |
MGGVEIPSWL KELPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKVIP PLPKPTKKYI 60 FSNLNKSLSK SPELGNDGNL PSVCSSSQFG SGDKGNNGEV KAVFTTRHQE LGYSSKRSKG 120 SIRQSAVHKQ VWQSGEAYTL EQFESKSKVF ARSHLAMIKE VTPLVVEALF WKAASEKPIY 180 VEYANDVPGS GFGEPEFSNW YFQKRRRKRK YDRNHRRNLN CEKREIDTER NSNIVNDEDV 240 SMKNDSDPSS ETCKLSPSSA SLLPDESPSF SKNRSSNAGP EREGTAGWKL SNSPWNLQVI 300 ARSPGSLTRF MLEDIPGVTS PMIYIGMLFS WFAWHVEDHE LHSLNYLHTG SPKTWYAVPG 360 DCGFAFEEAI RTQGYGGNID RLAALTLLGE KTNLLSPEVV VASRIPCCRL VQNPGEFVVT 420 FPRAYHVGFS HGFNCGEAAN FGTPQWLKVA KEAAVRRAAM DLLPMLSHQQ LLYMLTMSFI 480 SRVPRALLPG ARSSRLRDRQ KEERELLVKK AFIDDMLNEN NLLLAFLRKE STSRAVTWDP 540 ESLPFPSKDS QSLPSSSTVD VSCLLVDERN PDTHNPEKEK NSADRVHMET SNDSTMPLGN 600 VSFLDPKNAD NCENQVGPTR LSMGTVEDLY KDDNDLPCGL HVDSGTLACV ACGILGFPFM 660 SIVQPSQRAS EELFPADCQM AHEGQELLGL LNPLSPSEVD HTVKNSASDL QGAQEGNQKE 720 KILSKYNGHI PMTEADRRDV KLVNKNLEKS FSDATCSFLE TTDITETKDT TLLNHPITVA 780 PNDEMNHPMN CTADAGIPVV NISQDPKGLP IHPKGQVGKE WSRSNGFLRP RVFCLEHGLE 840 IEELLHSQGG ANVLIICHSA YPKIKAHAFA VAEEIGVPFY CEEVPLECAS QEDLDLINIS 900 IDDEEHEEGG EDWTSRMGIN LQYHVKLKKL FPSKQDRHAL ALGGLFSGMT PDSDVSSLKW 960 NSRKTRTPHK ATGPSQSKLC EKTQIKEDKP VEISDRSKAI RENTLIKYSR RACNDKMRFS 1020 SEASGKSCGH PGKHPPKEAF SANETVDNNR ILSEATLCST ENSRNDAMEL AKFPTMENSE 1080 LKRGDCTTEE TRETSVISDS SKSAGLLVFE NMRNDSIELT EFSSVQNSAE DTTRCTSVVP 1140 DPAKSPDTQA MAISTSGSFE TQTENGNLEE TNMDEKGGEY AIMDNTEMQQ EDQTATNEPK 1200 VYNQAMIMDT SEMQQEDQTA TNEAKVYNQA IIMDASEMQQ EDQTATNEPK VYNQAMIMDT 1260 SEMQQGDQTA TNEPVVYNQA NSMIMDNSEM QQADQTATNE PVVYNQANSM IMNNSEMQQE 1320 DKTATNDPVA CNQANSIGPP KLPMSVEESS VVLQDIQATE EAGVGNAEEA MKLESYPTVV 1380 DPEPTMREQN KRRREFEQIT EDEISNNGFI RGPCEGLRPR TSRTAASGIG TDNGITGEVL 1440 LKKVRQRSDG AVICKGKKEN EKEAFACNLE GCRMSFKTRA ELLMHKRNRC THKGCGKRFS 1500 SHKYAMLHQR VHVEERPLKC PWEGCKMSFK WAWARTEHLR VHTGERPYQC QVEGCGLTFR 1560 FVSDYSRHRR KTGHYVNSPT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 204 | 210 | KRRRKRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G04240.1 | 0.0 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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