PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA17597.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 525aa MW: 58945.6 Da PI: 6.8623

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA17597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.8	6.4e-12	71	97	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG+C+yG +C+++H++ OVA17597.1 71 PGEPDCSHYLRTGICRYGLNCRYNHPQ 97 5789*********************97 PP
2	zf-CCCH	32.3	1.7e-10	184	209	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ rtGtC+yG +C+++H+ OVA17597.1 184 PGEADCTHYIRTGTCRYGLNCRYNHP 209 57899********************9 PP
3	zf-CCCH	32.5	1.4e-10	237	261	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r G CkyG+ C+F H OVA17597.1 237 GQVECKYYLRPGGCKYGAACRFQHL 261 6789********************6 PP
4	zf-CCCH	28.3	2.9e-09	286	307	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f++rtG Ck+ +C+++H+ OVA17597.1 286 ECPFYMRTGSCKFATNCRYHHP 307 7********************8 PP
5	zf-CCCH	26.8	8.7e-09	429	454	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +f+++G Ck+ ++CkF+H++ OVA17597.1 429 GEKECEYFMKNGDCKFKSNCKFHHPK 454 7899********************96 PP
6	zf-CCCH	34.7	2.9e-11	472	497	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++r+G+Ck+G+ Ck+ H+p OVA17597.1 472 DEVTCSYYSRYGICKFGPACKYDHPP 497 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MGETEEEALV SKPKEELGLD SPSPSSHATD PPPSVETLDE KLKNLGLERK QNEKNDLDEE 60 RNVRPHHPLR PGEPDCSHYL RTGICRYGLN CRYNHPQRSK KQVRSSSDSP EPDDVSSSYN 120 TQFDGHSILS NLNLVVKEKE REKEGYQERR WQNLVLEKKQ NENSEDKTVD EEEKNRRFQH 180 PLRPGEADCT HYIRTGTCRY GLNCRYNHPT RSKKPAHSSS DSPNPDEEEE GYEEGEGQVE 240 CKYYLRPGGC KYGAACRFQH LQEKTFVAPT LDLNFLGLPV RPGEMECPFY MRTGSCKFAT 300 NCRYHHPNPT DLGGLDPLSG YHNTGSVPLH SSGLSQPAIP SWPLQRNSNE MVPYLEASPS 360 YAPLLSPPQG VHPNLEWNGY LPPLNPLYPP SANMGPPMGS VLGGSTKKAD GFTHHQQQMP 420 VDEYPERPGE KECEYFMKNG DCKFKSNCKF HHPKNRAPKC VLSPMGLPLR PDEVTCSYYS 480 RYGICKFGPA CKYDHPPNAG SSASGGARRM GGRGNVSEAL IQQSV

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MGETEEEALV SKPKEELGLD SPSPSSHATD PPPSVETLDE KLKNLGLERK QNEKNDLDEE  60
RNVRPHHPLR PGEPDCSHYL RTGICRYGLN CRYNHPQRSK KQVRSSSDSP EPDDVSSSYN  120
TQFDGHSILS NLNLVVKEKE REKEGYQERR WQNLVLEKKQ NENSEDKTVD EEEKNRRFQH  180
PLRPGEADCT HYIRTGTCRY GLNCRYNHPT RSKKPAHSSS DSPNPDEEEE GYEEGEGQVE  240
CKYYLRPGGC KYGAACRFQH LQEKTFVAPT LDLNFLGLPV RPGEMECPFY MRTGSCKFAT  300
NCRYHHPNPT DLGGLDPLSG YHNTGSVPLH SSGLSQPAIP SWPLQRNSNE MVPYLEASPS  360
YAPLLSPPQG VHPNLEWNGY LPPLNPLYPP SANMGPPMGS VLGGSTKKAD GFTHHQQQMP  420
VDEYPERPGE KECEYFMKNG DCKFKSNCKF HHPKNRAPKC VLSPMGLPLR PDEVTCSYYS  480
RYGICKFGPA CKYDHPPNAG SSASGGARRM GGRGNVSEAL IQQSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-85	C3H family protein