PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA15017.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 350aa MW: 37908 Da PI: 8.6541

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA15017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	6.9e-12	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yGdrC+++H++ OVA15017.1 49 PGEPNCVYYMRTGSCGYGDRCRYNHPR 75 5789*********************96 PP
2	zf-CCCH	38.5	2e-12	96	121	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+ff++tGtCk+G+ CkF+H++ OVA15017.1 96 GQPVCQFFLKTGTCKFGAYCKFHHPK 121 6799********************96 PP
3	zf-CCCH	35.8	1.4e-11	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ OVA15017.1 142 GEKECSYYVKTGQCKFGVTCKFHHPQ 167 7899********************97 PP
4	zf-CCCH	37.5	4.1e-12	299	325	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G +C+++H+p OVA15017.1 299 PGQPECPYYMRTGDCKFGTTCRYHHPP 325 5789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MERFGRYPAM EGSQSDPQVG WNSPVPETGL EVSMWQLGLG SRESYPERPG EPNCVYYMRT 60 GSCGYGDRCR YNHPRDRSMA AGAVRQGGGE YPEREGQPVC QFFLKTGTCK FGAYCKFHHP 120 KYGGGSMSPV ALNYYGYPLR PGEKECSYYV KTGQCKFGVT CKFHHPQPAG ASMPAPAPAP 180 AFYPTVQSPS VPSQSYGGAA ASWQVARPTL VSGSYVQGAF GPVLLPPGMV PISGWSPYPA 240 PLSPVASPGT QPTVRAAPLY GVTQLSPSAT EFAGPYRPLP SPAAPSNSSV KEHMFPERPG 300 QPECPYYMRT GDCKFGTTCR YHHPPEWITP KTNCVLSAMG LPLRPGKELL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MERFGRYPAM EGSQSDPQVG WNSPVPETGL EVSMWQLGLG SRESYPERPG EPNCVYYMRT  60
GSCGYGDRCR YNHPRDRSMA AGAVRQGGGE YPEREGQPVC QFFLKTGTCK FGAYCKFHHP  120
KYGGGSMSPV ALNYYGYPLR PGEKECSYYV KTGQCKFGVT CKFHHPQPAG ASMPAPAPAP  180
AFYPTVQSPS VPSQSYGGAA ASWQVARPTL VSGSYVQGAF GPVLLPPGMV PISGWSPYPA  240
PLSPVASPGT QPTVRAAPLY GVTQLSPSAT EFAGPYRPLP SPAAPSNSSV KEHMFPERPG  300
QPECPYYMRT GDCKFGTTCR YHHPPEWITP KTNCVLSAMG LPLRPGKELL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-131	C3H family protein