PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA12308.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C2H2

Protein Properties

Length: 533aa MW: 59384.1 Da PI: 6.5864

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA12308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.3e-06	283	304	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H OVA12308.1 283 FCLICGKGFKRDANLRMHMRGH 304 5*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MDSEDKLSSE TSRNSSMRND SSKRFILDHQ RFSHFDSQQP RLKCDDPASL DYEIGTEPPF 60 SRFNQSSEPS SSRPCNPKAQ NEILDQLDVR ANEMFVDPTR IHNWDPRAML SNLSFLEQKI 120 HQLQSLVHLI VGQEGRISGR SDELVAQQQQ LVSADLTSII VQLISTAGSL LPSVKSTLST 180 GNPFVSQLGN INGVGCPPSI HTNDELEQEN RETKGFNHSD VEQKANYVLE QNYAGKSNPS 240 ISTIEEHEFK DEEDAGEGEN LPPGSYEVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH 300 MRGHGDEYKT PAALAKPTKE STMEPVLIKR YSCPYVGCKR NKDHKKFQPL KTILCVKNHY 360 KRTHCDKSYI CSRCNSKRFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG 420 HTPALPLDET KGSTSDGGES NEATARVRST GFNFSSSTSS GSGIQNVLDP KSSVDDPSNY 480 FSPMNFDTCN FNGFHEFPRP PFEVPESSLS FLLSGSSNYI PKTGGSLGSE SLS

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MDSEDKLSSE TSRNSSMRND SSKRFILDHQ RFSHFDSQQP RLKCDDPASL DYEIGTEPPF  60
SRFNQSSEPS SSRPCNPKAQ NEILDQLDVR ANEMFVDPTR IHNWDPRAML SNLSFLEQKI  120
HQLQSLVHLI VGQEGRISGR SDELVAQQQQ LVSADLTSII VQLISTAGSL LPSVKSTLST  180
GNPFVSQLGN INGVGCPPSI HTNDELEQEN RETKGFNHSD VEQKANYVLE QNYAGKSNPS  240
ISTIEEHEFK DEEDAGEGEN LPPGSYEVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH  300
MRGHGDEYKT PAALAKPTKE STMEPVLIKR YSCPYVGCKR NKDHKKFQPL KTILCVKNHY  360
KRTHCDKSYI CSRCNSKRFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG  420
HTPALPLDET KGSTSDGGES NEATARVRST GFNFSSSTSS GSGIQNVLDP KSSVDDPSNY  480
FSPMNFDTCN FNGFHEFPRP PFEVPESSLS FLLSGSSNYI PKTGGSLGSE SLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein