PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA11798.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21484.9 Da PI: 10.1064 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.1 | 1.3e-19 | 21 | 62 | 8 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 qvtfskRrng++KKA+EL+++C+a+ a++++s+ gk + + OVA11798.1 21 YLQVTFSKRRNGLFKKASELCTMCGAKTAIVVYSPAGKAFSF 62 569**********************************97766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MEKKTQGRKK IDMEKIKRRD YLQVTFSKRR NGLFKKASEL CTMCGAKTAI VVYSPAGKAF 60 SFGHPCVEST LDKFLATASL IEIGESSLGV PSFPDYHWNI GINKLNRHIN ELVNQLEAEK 120 KYREGQFLWN KPIENLKFHE LEQLRVSMEE LKIKMVNRTE GLKRASMLSS YIDINQVRRT 180 EDKGVQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-38 | M-type_MADS family protein |