PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA11788.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

NF-YC

Protein Properties

Length: 283aa MW: 30719.7 Da PI: 4.3907

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA11788.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	35.5	2.2e-11	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++++v++ ++fdfl +iv + OVA11788.1 1 MQADEDVGKIALAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMSALHLKQCVQSFNVFDFLREIVSK 69 899**************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MQADEDVGKI ALAVPLLVSK ALELFLQDLC DRTYDITLRR GAKTMSALHL KQCVQSFNVF 60 DFLREIVSKV PDLGGADAGG EDRAAKRRKT AGDEDNDTDD EAKRARIAHE MGHSSSSTGR 120 GRGRGRGRGR GRGSRAVERE SARLEKCEDD LDLSPQHDKQ NLEPGRLDNG AEAKELTENT 180 DVGSSANTEI RNFDLNVDLD ENGTAAAAAA AAIRSECAAA AAATPAPTPP ASSAEPPPEM 240 KQHEEYPGWS LSDMDKMAID PLQLAQLNNT RLDEEEEDYD EEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	129	RGRGRGRGRG
2	120	130	RGRGRGRGRGR
3	122	131	RGRGRGRGRG
4	122	132	RGRGRGRGRGR
5	124	133	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-40	NF-YC family protein