PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA11252.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C2H2

Protein Properties

Length: 400aa MW: 46092 Da PI: 6.6865

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA11252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	162	185	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H OVA11252.1 162 YVCSVCGRKCRTNLDLKKHFKQlH 185 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MKPLCNLTAD LLSLKPPSSP LFLNRPKLVN PRFPNTVTLI RPSSHSNALQ WRISSTADNP 60 SNSAAITEVD MVKNSEGVWS AKQNKVVVLW DLDNKPPRGP PYQAAMALKQ VAHKFGELID 120 ISAYANRHTF VHLPQWVLEE RRERRQMDVL ERKGLSIPSD PYVCSVCGRK CRTNLDLKKH 180 FKQLHERERQ KKLNRMRSLK GKKRQRYKER FVSGNHKYEE AARSLLRPKV GYGLASELRR 240 AGVFVKMVED KPQAADWAVK RQMQHSMSRG IDWLFLVSDD SDFSDMLRRA KEANLGTVVV 300 GDWHRALGRH ADFWVPWNGV ENGEIAEEDL ASWKNRVEFM DRDEGDLFSI RDFDDDDDED 360 SEEEDEFDLD QVVDELVVTN SGFNGLRISA FSEGEDEDYY

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MKPLCNLTAD LLSLKPPSSP LFLNRPKLVN PRFPNTVTLI RPSSHSNALQ WRISSTADNP  60
SNSAAITEVD MVKNSEGVWS AKQNKVVVLW DLDNKPPRGP PYQAAMALKQ VAHKFGELID  120
ISAYANRHTF VHLPQWVLEE RRERRQMDVL ERKGLSIPSD PYVCSVCGRK CRTNLDLKKH  180
FKQLHERERQ KKLNRMRSLK GKKRQRYKER FVSGNHKYEE AARSLLRPKV GYGLASELRR  240
AGVFVKMVED KPQAADWAVK RQMQHSMSRG IDWLFLVSDD SDFSDMLRRA KEANLGTVVV  300
GDWHRALGRH ADFWVPWNGV ENGEIAEEDL ASWKNRVEFM DRDEGDLFSI RDFDDDDDED  360
SEEEDEFDLD QVVDELVVTN SGFNGLRISA FSEGEDEDYY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	182	RRERRQMDVLERKGLSIPSDPYVCSVCGRKCRTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-156	C2H2 family protein