PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OVA09744.1
Organism
Macleaya cordata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
Family C3H
Protein Properties Length: 323aa    MW: 33803 Da    PI: 9.8194
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OVA09744.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08113138227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt++C+ f     Ck+Gd+C+FaH++
  OVA09744.1 113 KTRICNKFNSAEGCKFGDKCHFAHSE 138
                 89**********************95 PP
2zf-CCCH31.92.2e-10293317126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC ++ + G C +G+rC+FaHg
  OVA09744.1 293 YKTKLCENHTK-GSCTFGERCHFAHG 317
                 9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MEFGGARKRG RQDGSFNGNG GGFNKRNKQE MESFTTGIGS KSKPCTKFFS TAGCPFGEGC  60
HFLHYVPGGI NAVAQMTNLG GNQAAPPPPF PRNQVVSQPP MHHQNGSSLA GAKTRICNKF  120
NSAEGCKFGD KCHFAHSERE LGRGGAPTHA HEDPRAMGPP HMAMTGGRFP GRMEPPPPPP  180
GLAAAASFGA SATAKISVDA SLAGAIIGKG GVNSKQICRI TGAKLAIREH ESDPNLRNIE  240
LEGTFDQIKQ ASAMVRELIV NVGSSAGAAS MNHHPAAGAG AAAAHNNTPA NNYKTKLCEN  300
HTKGSCTFGE RCHFAHGANE LRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-47C3H family protein