PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA08646.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C2H2

Protein Properties

Length: 458aa MW: 51115 Da PI: 8.2012

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA08646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OVA08646.1 54 YVCEICNQGFQRDQNLQMHRRRH 76 9*********************9 PP
2	zf-C2H2	16	3.4e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ OVA08646.1 131 WVCEKCSKGYAVQSDYKAHLKTC 153 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MLGNNSSSTI PTEDFTCSEN GSNSKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN 60 QGFQRDQNLQ MHRRRHKVPW KLLKRETPEV RKRVFVCPEP SCLHHDPCHA LGDLVGIKKH 120 FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACN 180 AGRIRSDLQT LQPAACLSRT ASSPSPSSDT NFSTAPWPGL RITKPTTETV FLCPDRKHQN 240 STPSSADNHH HNLELQLLPS SNPHLMNNMD TSVSQNSDEN HVTQLQLSIG SCDHGEKNES 300 NQPNSNKSGC GSSPRDAMNV EEPAIAASRM KEQAREQLKL AMAEKAFAEE ARQQAKRQIE 360 LAEQEFANAK RIRQQAQAEL DKAQILKEHA TKQINSTILQ ITCHACKQQF QATIATSSAP 420 PDENSLVVSY MSSAITEGEG ENDNHRSNIH QQAKISKT

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MLGNNSSSTI PTEDFTCSEN GSNSKRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN  60
QGFQRDQNLQ MHRRRHKVPW KLLKRETPEV RKRVFVCPEP SCLHHDPCHA LGDLVGIKKH  120
FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACN  180
AGRIRSDLQT LQPAACLSRT ASSPSPSSDT NFSTAPWPGL RITKPTTETV FLCPDRKHQN  240
STPSSADNHH HNLELQLLPS SNPHLMNNMD TSVSQNSDEN HVTQLQLSIG SCDHGEKNES  300
NQPNSNKSGC GSSPRDAMNV EEPAIAASRM KEQAREQLKL AMAEKAFAEE ARQQAKRQIE  360
LAEQEFANAK RIRQQAQAEL DKAQILKEHA TKQINSTILQ ITCHACKQQF QATIATSSAP  420
PDENSLVVSY MSSAITEGEG ENDNHRSNIH QQAKISKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	30	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-157	C2H2 family protein