PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA08605.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 911aa MW: 102257 Da PI: 8.2482

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA08605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	184	204	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C fa+ G C++G++C+F H OVA08605.1 184 PACTAFAA-GRCRRGSNCRFLH 204 5799**.*********** PP
2	zf-CCCH	21.2	5e-07	275	295	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++G++C++aH+ OVA08605.1 275 RCDDFLK-GNCRRGSSCRYAHD 295 6****.***********5 PP
3	zf-CCCH	23.1	1.3e-07	332	352	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G+C++Gd+C+F+H OVA08605.1 332 KPCKFFAA-GHCRHGDNCRFSH 352 699999.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence
MTESVRRRNS KWDLKEDPDH FPIEIRQDRA IEIRQDRAWS GRGGEFIHDK ESKSEWHSSR 60 GLSSHDPKWS DIEGKRMPRN EGNSGWLCSL EPSPRNRGVQ NDEINKRVYN EMSKTMTLDG 120 DRSYSMSMSP GLDGWRQQNR SRSPKSGWSR SHRSRSRSRT PPHGYRRELE GSNDRRSGSR 180 VSAPACTAFA AGRCRRGSNC RFLHQDNHDY DGRRYSGSSP ENGGSKHGKG GFLRNANTEE 240 QMDHSRDRIS HGHENVYDGD LEKSDILRNN RSSGRCDDFL KGNCRRGSSC RYAHDGASSD 300 GHGIRERDHD RKDTDAPYGH DNRHEPRRIN SKPCKFFAAG HCRHGDNCRF SHEGTARASP 360 ERRSDDDNRR SHELDHEKRS WGGPKWCDIA PDSAHNGPKE QLVMDKLGNN LGNENRSWVG 420 PKWSDITDNH NLSNENRSWE VPKWSDKVVD SDVKLPSWGN DSDGEKMGVV ESRTTERSFE 480 NMQGQNLDNA SRTWGGPLLN DKPVDRDMHK SPQWISDNNG GSMGFRESMG SGKFLTSESM 540 LSSGAKDQYP RFINEDMEHN QDSKSRNPNE INLPTGKQNI TQAVSGQPHS SINVNGQSQQ 600 VLPTPAFNPK ERVQQIVSPP SSNPYHKKMA HQEEPIKKPD LVDPRLIAQQ VSSGAPMTQN 660 VASSEQVAQL TNISASLAQI LANGQHLPQL YAALNPTASG LVPSHPNSVG PPQVVAPLIQ 720 PNQTTQSQKQ YDPISDSIDQ DKAADDSQSP LKTIAPSSVS ADPNGGDASN IGILEEKVHE 780 SHELKQPEQV VDQNAADDIK KEQHTGHSGQ MDVDGRIDEE GKKNKDPKVM RVFKFALVEF 840 VKELLKPTWK EGQMSKEAHK TIVKKVVDKV TGTIQGAQIP QTQEKIDHYL SYSKPKLTKL 900 VQAYVEKYLK T

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence

MTESVRRRNS KWDLKEDPDH FPIEIRQDRA IEIRQDRAWS GRGGEFIHDK ESKSEWHSSR  60
GLSSHDPKWS DIEGKRMPRN EGNSGWLCSL EPSPRNRGVQ NDEINKRVYN EMSKTMTLDG  120
DRSYSMSMSP GLDGWRQQNR SRSPKSGWSR SHRSRSRSRT PPHGYRRELE GSNDRRSGSR  180
VSAPACTAFA AGRCRRGSNC RFLHQDNHDY DGRRYSGSSP ENGGSKHGKG GFLRNANTEE  240
QMDHSRDRIS HGHENVYDGD LEKSDILRNN RSSGRCDDFL KGNCRRGSSC RYAHDGASSD  300
GHGIRERDHD RKDTDAPYGH DNRHEPRRIN SKPCKFFAAG HCRHGDNCRF SHEGTARASP  360
ERRSDDDNRR SHELDHEKRS WGGPKWCDIA PDSAHNGPKE QLVMDKLGNN LGNENRSWVG  420
PKWSDITDNH NLSNENRSWE VPKWSDKVVD SDVKLPSWGN DSDGEKMGVV ESRTTERSFE  480
NMQGQNLDNA SRTWGGPLLN DKPVDRDMHK SPQWISDNNG GSMGFRESMG SGKFLTSESM  540
LSSGAKDQYP RFINEDMEHN QDSKSRNPNE INLPTGKQNI TQAVSGQPHS SINVNGQSQQ  600
VLPTPAFNPK ERVQQIVSPP SSNPYHKKMA HQEEPIKKPD LVDPRLIAQQ VSSGAPMTQN  660
VASSEQVAQL TNISASLAQI LANGQHLPQL YAALNPTASG LVPSHPNSVG PPQVVAPLIQ  720
PNQTTQSQKQ YDPISDSIDQ DKAADDSQSP LKTIAPSSVS ADPNGGDASN IGILEEKVHE  780
SHELKQPEQV VDQNAADDIK KEQHTGHSGQ MDVDGRIDEE GKKNKDPKVM RVFKFALVEF  840
VKELLKPTWK EGQMSKEAHK TIVKKVVDKV TGTIQGAQIP QTQEKIDHYL SYSKPKLTKL  900
VQAYVEKYLK T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-16	C3H family protein