PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA08422.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 689aa MW: 76243.5 Da PI: 6.5162

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA08422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	398	418	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ff++ G C+ Gd+CkF+H+ OVA08422.1 398 YCEFFLK-GRCQKGDSCKFSHD 418 5****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MAEGAPFAFR HRRSHLKSET VGTLLRILSL CVEESQSSHP HPIVSDALNP GVHNEELERI 60 TQQESQNEIL LIENDLLSNK SVEVISIEPS TLVVEKDMII DEVVASINNH CDLVEESRQG 120 DEEIKIDKHL NFEILGAIKP AEDTEVGLFS SEQNVVEEVA HEMQQKETGL TKPVNLDTTM 180 DCSVCLITDM EIEDGEIPDD TWVYGQSIDL FHEDSALLEE MKVGGDQNLG EVIRKSESDN 240 VEKHVASTFC RASTTDSMNS IQEELKRKSG EKHDRDDILG YKRSGDVEQA DGDDGMLEAR 300 RNAKGGGEAK GVVNLPQTYL DNLGYSFKTS DNIMTDDQGS APKVKDTKGG DKIKRVLTKE 360 RKAKKKRNER KRRAEKNKEQ GVKRLKIVPI LKPKVVKYCE FFLKGRCQKG DSCKFSHDTI 420 PLTKSEPCTF FARNSCMKGD DCPFDHQLSK YPCNNYVSKG DCIRGDKCLF SHKLVESRSP 480 SSNIKQTEAG SQSLLGNSNT KRNQTTKNTH SQTLNNISKE TSLRTPSSAG TLVQRNSVEN 540 MSGRLKTPAY APKGVTFLSF GNAPTHDSSN RDVQKDQKAS GKPQNSNELL WKMPATPLPL 600 CRSSTNPSPN GQNKNSAERA LTSTLAFAAK YEAEMMKGRS ICSTDLITEA NKASKSSTSS 660 SIDNVQNGWM KASPILQEFL FGVGGDGKL

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MAEGAPFAFR HRRSHLKSET VGTLLRILSL CVEESQSSHP HPIVSDALNP GVHNEELERI  60
TQQESQNEIL LIENDLLSNK SVEVISIEPS TLVVEKDMII DEVVASINNH CDLVEESRQG  120
DEEIKIDKHL NFEILGAIKP AEDTEVGLFS SEQNVVEEVA HEMQQKETGL TKPVNLDTTM  180
DCSVCLITDM EIEDGEIPDD TWVYGQSIDL FHEDSALLEE MKVGGDQNLG EVIRKSESDN  240
VEKHVASTFC RASTTDSMNS IQEELKRKSG EKHDRDDILG YKRSGDVEQA DGDDGMLEAR  300
RNAKGGGEAK GVVNLPQTYL DNLGYSFKTS DNIMTDDQGS APKVKDTKGG DKIKRVLTKE  360
RKAKKKRNER KRRAEKNKEQ GVKRLKIVPI LKPKVVKYCE FFLKGRCQKG DSCKFSHDTI  420
PLTKSEPCTF FARNSCMKGD DCPFDHQLSK YPCNNYVSKG DCIRGDKCLF SHKLVESRSP  480
SSNIKQTEAG SQSLLGNSNT KRNQTTKNTH SQTLNNISKE TSLRTPSSAG TLVQRNSVEN  540
MSGRLKTPAY APKGVTFLSF GNAPTHDSSN RDVQKDQKAS GKPQNSNELL WKMPATPLPL  600
CRSSTNPSPN GQNKNSAERA LTSTLAFAAK YEAEMMKGRS ICSTDLITEA NKASKSSTSS  660
SIDNVQNGWM KASPILQEFL FGVGGDGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	364	394	KKKRNERKRRAEKNKEQGVKRLKIVPILKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	3e-07	C3H family protein