PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA08163.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C2H2

Protein Properties

Length: 568aa MW: 62027.8 Da PI: 8.6244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA08163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OVA08163.1 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	13.2	0.00027	149	171	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ OVA08163.1 149 WKCEKCSKRYAVQSDWKAHSKTC 171 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MKGLILQQQQ PLVVEENMSN LTSASGEGIV SSSPHQSTQT PSVKRKRSLP GNPDPDAEVI 60 ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVK KRVYVCPEPT 120 CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AEESARSITV NPLLSSHQPG GTSTSHLNLQ PQFNTHHDHF 240 QAIPIKTDHP HHQHQQQQHF NLRSEIPPWL SCPPPIDLSS SSSMFSTRFD QEFSQSTQTS 300 IHQNNSETDH HQGPSLSNLP APYQASASPH MSATALLQKA AQMGATISKP SSSSSSTAMV 360 IRPHHAHMST AANTGNPSTT SVNTTGTGFG LGLSSHEEIE SGFLHGLTSF GNKAAVGSGL 420 MDHVSAQTAG VAAETAGSVG HHQPSLLQDM MISLSNSASG FDGSSSFEHH QAFGGTGMLN 480 SNRDGKNPNQ INLSHESRTT PRNHNILSRN DGSSTGGGGN DGMTRDFLGL RAFSHTDILN 540 MAGFDQCMNS SSSSSHYEQQ QNRKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MKGLILQQQQ PLVVEENMSN LTSASGEGIV SSSPHQSTQT PSVKRKRSLP GNPDPDAEVI  60
ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVK KRVYVCPEPT  120
CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARSITV NPLLSSHQPG GTSTSHLNLQ PQFNTHHDHF  240
QAIPIKTDHP HHQHQQQQHF NLRSEIPPWL SCPPPIDLSS SSSMFSTRFD QEFSQSTQTS  300
IHQNNSETDH HQGPSLSNLP APYQASASPH MSATALLQKA AQMGATISKP SSSSSSTAMV  360
IRPHHAHMST AANTGNPSTT SVNTTGTGFG LGLSSHEEIE SGFLHGLTSF GNKAAVGSGL  420
MDHVSAQTAG VAAETAGSVG HHQPSLLQDM MISLSNSASG FDGSSSFEHH QAFGGTGMLN  480
SNRDGKNPNQ INLSHESRTT PRNHNILSRN DGSSTGGGGN DGMTRDFLGL RAFSHTDILN  540
MAGFDQCMNS SSSSSHYEQQ QNRKPWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	C2H2 family protein