PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA07880.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 753aa MW: 84956.7 Da PI: 5.5411

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA07880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.9e-07	126	146	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f++ G C GdrC+F+H OVA07880.1 126 PCYYFQK-GLCLKGDRCPFMHE 146 8****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MKAGSQDSSN PQTTAEDETL KRNTDCVYFL ASPLTCKKGS ECEYRHSEDA RMNPRDCWYW 60 MNGNCLNPKC SFRHPPLDGL LGTAVTTSTR SSLPPSLAAA PTQLSTPHNP ASNLGKQANP 120 HKQATPCYYF QKGLCLKGDR CPFMHEPLSV DSSVPQPPAA KVAISVTESQ IPKKAFGSLQ 180 SCSTQQQKFQ QGNTIKPVEV PHAAKPPAKP EIALSKNGIA VKKTAPQTNS YRDELPRYKP 240 PNVPPVISAD SVSRTHRSRQ AYPLDYPSFQ NGKEPDEFLA ESSPGFDVLV DDELRDSDYY 300 HNEDEFGRMK GHEGRHANTV NEFDYKRSSD YTSVGKFDQE TYNDSRSYDL YGRMQDQYVQ 360 EQRRPSSERT SERPIERRGF SRAESPSQVD RSDLRYRLSK HRKVNGSRSA VSPDRRGEFY 420 RRDDRDRNVG DQRFRDHSRR DTRSSIPRES SIISNRLQGR IKLPGRSSPD NHYNDSHKER 480 ETDGGINRGR LSPPGRLPAS SPSQGRLQDR IKRRTPEDFT TEGRNFRGPP IKRDEVDNNT 540 LNFAGPKSLA ELKGSKVSNE NHQKNTETRK LVSYQESEGS PSFEGPKPLN VILKRKREAG 600 TAGSGDDTFS GNEEETNQRR KGLLTSSRSS GVAEKQSEMP FESKIEEAHR SKEDDLEEEE 660 GLISAEGDDV THEDHSFEQK GADLQEEDVI MADKLEEQEF ESYDQRDGEY DYEPVEGGDF 720 KTEEDDVNAD AEEDFSDDED GDDFAKRIGV MFS

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MKAGSQDSSN PQTTAEDETL KRNTDCVYFL ASPLTCKKGS ECEYRHSEDA RMNPRDCWYW  60
MNGNCLNPKC SFRHPPLDGL LGTAVTTSTR SSLPPSLAAA PTQLSTPHNP ASNLGKQANP  120
HKQATPCYYF QKGLCLKGDR CPFMHEPLSV DSSVPQPPAA KVAISVTESQ IPKKAFGSLQ  180
SCSTQQQKFQ QGNTIKPVEV PHAAKPPAKP EIALSKNGIA VKKTAPQTNS YRDELPRYKP  240
PNVPPVISAD SVSRTHRSRQ AYPLDYPSFQ NGKEPDEFLA ESSPGFDVLV DDELRDSDYY  300
HNEDEFGRMK GHEGRHANTV NEFDYKRSSD YTSVGKFDQE TYNDSRSYDL YGRMQDQYVQ  360
EQRRPSSERT SERPIERRGF SRAESPSQVD RSDLRYRLSK HRKVNGSRSA VSPDRRGEFY  420
RRDDRDRNVG DQRFRDHSRR DTRSSIPRES SIISNRLQGR IKLPGRSSPD NHYNDSHKER  480
ETDGGINRGR LSPPGRLPAS SPSQGRLQDR IKRRTPEDFT TEGRNFRGPP IKRDEVDNNT  540
LNFAGPKSLA ELKGSKVSNE NHQKNTETRK LVSYQESEGS PSFEGPKPLN VILKRKREAG  600
TAGSGDDTFS GNEEETNQRR KGLLTSSRSS GVAEKQSEMP FESKIEEAHR SKEDDLEEEE  660
GLISAEGDDV THEDHSFEQK GADLQEEDVI MADKLEEQEF ESYDQRDGEY DYEPVEGGDF  720
KTEEDDVNAD AEEDFSDDED GDDFAKRIGV MFS