PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA07709.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 26833.3 Da PI: 8.019 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.9 | 2.2e-40 | 32 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+ OVA07709.1 32 PCGACKFLRRKCVNGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHRRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQ 130 7***********************9989********************************************************************999 PP DUF260 99 ee 100 ++ OVA07709.1 131 AH 132 86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MSGANTCSSS GGGGGGGSCG GGGGNSGGGG GPCGACKFLR RKCVNGCIFA PYFDSEQGAA 60 HFAAVHKVFG ASNVSKLLLH IPVHRRLDAV VTICYEAQAR LRDPVYGCVA HIFALQQQVV 120 NLQAELSYLQ AHLATLELPS PPPPPALLSV PPPLSISDLP SAATVPATFD LSALFDPLVQ 180 PQWTMQQQQQ QQQSRQTDNI VRQFGGGSRT QLNNDNPSAS GGNGDLQALA RELLHRHRSL 240 VVSAPSAEPS APPPPLSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-65 | LBD family protein |