PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA07509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 551aa MW: 59879.4 Da PI: 7.3904 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 3e-10 | 164 | 188 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tC++Gd+CkF H+ OVA07509.1 164 GEKDCAHYMLTRTCRFGDSCKFDHP 188 7889********************8 PP | |||||||
2 | zf-CCCH | 32.6 | 1.4e-10 | 216 | 241 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G +CkF+H++ OVA07509.1 216 GEDDCPYFLKTKKCKFGIKCKFNHPK 241 7789********************96 PP | |||||||
3 | zf-CCCH | 41 | 3.2e-13 | 264 | 288 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G++CkF+H++ OVA07509.1 264 EPPCSFYMKTGKCKFGASCKFHHPK 288 79*********************96 PP | |||||||
4 | zf-CCCH | 34.3 | 4.1e-11 | 345 | 368 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ OVA07509.1 345 EVHCPFYLKTGSCKYGATCRYNHP 368 566********************9 PP | |||||||
5 | zf-CCCH | 40.8 | 3.6e-13 | 430 | 453 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG Ck+G+rCkF+H+ OVA07509.1 430 QIECDFYMKTGDCKFGERCKFHHP 453 568********************8 PP | |||||||
6 | zf-CCCH | 37.4 | 4.4e-12 | 486 | 509 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCky +C+F H+p OVA07509.1 486 VVCPFYMKTGTCKYSVNCRFDHPP 509 67********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence |
MANQIYGYNP SSYGAGTSYY SSRTVIDPYH PDSSFISSSA LLDSSSNYPS MYMNHHDGFG 60 AGAGYSSARI SAEMAGVTGG VPTSSSTPTM THSLSQSLWP PGVDVGAASF GPLHAGAKRS 120 ADALYHQTYP GTNNTFGQSE ALYSTKHPRL ESTSHLPIYP QRPGEKDCAH YMLTRTCRFG 180 DSCKFDHPSW VPEGGIPDWK EVQLVPTIES LPERPGEDDC PYFLKTKKCK FGIKCKFNHP 240 KDKINSTDAP DTVDVSLLPE RPSEPPCSFY MKTGKCKFGA SCKFHHPKDI QIPVTGQENG 300 NIEQTDSVVA VDGKTIGDAM LVKPYAPFTP ALLHNSKGLP VRPGEVHCPF YLKTGSCKYG 360 ATCRYNHPDR FAINPPVAAA LGHAIITSPA TNLNIGFINP AASILPTIDP RLAQATLGLG 420 QTVYPQRPGQ IECDFYMKTG DCKFGERCKF HHPIDRSAPT QSVNKLTLQQ NIKLTLAGLP 480 RREGAVVCPF YMKTGTCKYS VNCRFDHPPP GEAVAMATVV QGETNSASAP GDVEDNNKED 540 HTIIQEQQQQ S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-173 | C3H family protein |