PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA07008.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 364aa MW: 41070.1 Da PI: 7.5527

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA07008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C Gd C F+H+ OVA07008.1 3 KRVLCKFFAH-GACLKGDHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	24.4	5.1e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ OVA07008.1 34 ICTFYQK-GACTYGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	21.1	5.7e-07	145	167	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G+rC+ +Hg OVA07008.1 145 RPICS-FAAAGNCPRGERCPHIHG 167 79999.*************99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSKRVLCKFF AHGACLKGDH CEFSHDWKDQ SNNICTFYQK GACTYGSRCR YEHVKASRPQ 60 NSLSSSSTDS HLHIPSNSVQ VTSHPSRNAS STETSPVLSV HVELSALSRP FFPPSTPVWH 120 QESGDNNFLE NENGGEFTAN DPADRPICSF AAAGNCPRGE RCPHIHGNLC PTCEKYCLHP 180 YRSDEREEHI KTCERKQKHL EALKHSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC 240 ISCIRNWRSN SPTSGMDVNT ALRACPICRK LSYFVIPSVI WYSTQEEKQD IVCSYKARLS 300 SIDCRYFDFG NGTCPFGSSC FYKHAYRDGS LEEVVLRHLG AEDGNTVIAK DIRLSDFLRN 360 LHLR

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSKRVLCKFF AHGACLKGDH CEFSHDWKDQ SNNICTFYQK GACTYGSRCR YEHVKASRPQ  60
NSLSSSSTDS HLHIPSNSVQ VTSHPSRNAS STETSPVLSV HVELSALSRP FFPPSTPVWH  120
QESGDNNFLE NENGGEFTAN DPADRPICSF AAAGNCPRGE RCPHIHGNLC PTCEKYCLHP  180
YRSDEREEHI KTCERKQKHL EALKHSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC  240
ISCIRNWRSN SPTSGMDVNT ALRACPICRK LSYFVIPSVI WYSTQEEKQD IVCSYKARLS  300
SIDCRYFDFG NGTCPFGSSC FYKHAYRDGS LEEVVLRHLG AEDGNTVIAK DIRLSDFLRN  360
LHLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-151	C3H family protein