PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA06769.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

RAV

Protein Properties

Length: 387aa MW: 43084.2 Da PI: 8.6873

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA06769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.7	1.4e-13	61	109	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a ++++g OVA06769.1 61 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKAYDIAVQRFRG 109 78**9888.8*****3.....5**********************998 PP
2	B3	100.8	8e-32	197	296	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++ +++l++ OVA06769.1 197 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqiGTI-SKGVLLNFEDNEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVVSFQRSTAPDKQLYI 294 89*************************96444.5889***********************************************87778887877 PP EE CS B3 95 kv 96 + OVA06769.1 295 DW 296 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MDGSCIDEGT STDSISVSPN TKPDSPEKNS QMKLCRMGSG TSVVLDSENG VEAESRKLPS 60 SQYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAAKAY DIAVQRFRGR DAVTNFKLNM 120 VEDDDDMESV FLNSRSKAEI VDMLRKHTYN DELEHSKRNY TSTTSKNVGG SRFLMGSAGT 180 GTGLDPVLLM KTRGYLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQIGTI SKGVLLNFED 240 NEGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDVV SFQRSTAPDK QLYIDWKPRN 300 ASAVAVGLGQ EPVNPVETGQ MVRLFGVNIF KIPVSGNSVM DIGSNISCNS SNSKRMRDNE 360 VDXVLDPKFF GYISDPPNGY PRVPGSV

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MDGSCIDEGT STDSISVSPN TKPDSPEKNS QMKLCRMGSG TSVVLDSENG VEAESRKLPS  60
SQYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEEEAAKAY DIAVQRFRGR DAVTNFKLNM  120
VEDDDDMESV FLNSRSKAEI VDMLRKHTYN DELEHSKRNY TSTTSKNVGG SRFLMGSAGT  180
GTGLDPVLLM KTRGYLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQIGTI SKGVLLNFED  240
NEGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKSLKAGDVV SFQRSTAPDK QLYIDWKPRN  300
ASAVAVGLGQ EPVNPVETGQ MVRLFGVNIF KIPVSGNSVM DIGSNISCNS SNSKRMRDNE  360
VDXVLDPKFF GYISDPPNGY PRVPGSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-142	RAV family protein