PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA05434.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

RAV

Protein Properties

Length: 389aa MW: 44666.1 Da PI: 8.2425

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA05434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.5	2.2e-10	51	98	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +++kGV +g W A+I+ + +r++lg+f +++eAa a++ a+ kl+ OVA05434.1 51 PRFKGVVLQQ-NGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAIKLR 98 68999877.8**999......44******99**********98 PP
2	B3	85.5	4.8e-27	181	280	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+pkk+a ++ gg+ ++++++ d++ +sW+++++y+k+s+++v+t+GW++Fvk+++Lk++D+++F OVA05434.1 181 FQKELTPSDVGKLNRLVIPKKYAVKYfpqvsevsnweeedkdgGGV--DDVQVVIFDKQMKSWKFRYCYWKSSQSFVFTRGWSRFVKEKELKAKDVITF 277 99************************999999988877764433..7889********************************************* PP EE- CS B3 83 kld 85 ++ OVA05434.1 278 YRC 280 954 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MSMEEEMLSM ISNEGGLNAV AEHSDSYSSS NPCLQNNKRQ KQENNTTSLS PRFKGVVLQQ 60 NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSDHRNYPWS NLTIQEPYFQ 120 NLHTTEAVLN MIKDGSYQSK FLDFVKARSL KMDKEARELN NLLNRGSCVN DRRGFSCQQL 180 FQKELTPSDV GKLNRLVIPK KYAVKYFPQV SEVSNWEEED KDGGGVDDVQ VVIFDKQMKS 240 WKFRYCYWKS SQSFVFTRGW SRFVKEKELK AKDVITFYRC EYREWFKEQQ QEAAFCMVDI 300 GYNGDESSNG GGFVGGFADG FTGKRRLELQ LGYGQNSTRC GTSSGRDRKR WEDEETEYKV 360 NMGLAPPQPV LADDKKKGFR LFGVNVIVD

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MSMEEEMLSM ISNEGGLNAV AEHSDSYSSS NPCLQNNKRQ KQENNTTSLS PRFKGVVLQQ  60
NGHWGAQIYA NHQRIWLGTF KSEKEAAMAY DSAAIKLRSG DSDHRNYPWS NLTIQEPYFQ  120
NLHTTEAVLN MIKDGSYQSK FLDFVKARSL KMDKEARELN NLLNRGSCVN DRRGFSCQQL  180
FQKELTPSDV GKLNRLVIPK KYAVKYFPQV SEVSNWEEED KDGGGVDDVQ VVIFDKQMKS  240
WKFRYCYWKS SQSFVFTRGW SRFVKEKELK AKDVITFYRC EYREWFKEQQ QEAAFCMVDI  300
GYNGDESSNG GGFVGGFADG FTGKRRLELQ LGYGQNSTRC GTSSGRDRKR WEDEETEYKV  360
NMGLAPPQPV LADDKKKGFR LFGVNVIVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	5e-98	RAV family protein