PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA05032.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

RAV

Protein Properties

Length: 359aa MW: 40352.8 Da PI: 8.6594

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA05032.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.1	2.6e-14	55	103	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a+++++g OVA05032.1 55 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKAYDIAAQRFRG 103 78**9888.8*****3.....5***********************98 PP
2	B3	105.5	2.8e-33	187	288	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed+ g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F+++ ++++l++ OVA05032.1 187 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqiG-TNSKGVLLNFEDKGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDVVSFMRSTGDDKQLLI 284 89*************************964.446899***********************************************88668887888 PP EEE- CS B3 95 kvfr 98 ++ OVA05032.1 285 DFRP 288 7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDSSCIDETS SDSISVSPMT ILVPPEKLCR VGSGSSVVLD SEIGVEAESR KLPSSQYKGV 60 VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AKAYDIAAQR FRGRDAITNF KPLLDTNEDD 120 IELAFLNSHS KAEIVDMLRK HTYNDELDQS KRSFGDGTCY GKASRGGVYM GLSTVSGRVM 180 EAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQIGTN SKGVLLNFED KGGKVWRFRY 240 SYWNSSQSYV LTKGWSRFVK EKGLKAGDVV SFMRSTGDDK QLLIDFRPRI GSGSMQPVYP 300 VQQVQVVRLF GVNIFKMPAA VDSFVEGKKD TWNGNKRMRE VELLQTVDCC KKQHIFEAL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDSSCIDETS SDSISVSPMT ILVPPEKLCR VGSGSSVVLD SEIGVEAESR KLPSSQYKGV  60
VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AKAYDIAAQR FRGRDAITNF KPLLDTNEDD  120
IELAFLNSHS KAEIVDMLRK HTYNDELDQS KRSFGDGTCY GKASRGGVYM GLSTVSGRVM  180
EAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQIGTN SKGVLLNFED KGGKVWRFRY  240
SYWNSSQSYV LTKGWSRFVK EKGLKAGDVV SFMRSTGDDK QLLIDFRPRI GSGSMQPVYP  300
VQQVQVVRLF GVNIFKMPAA VDSFVEGKKD TWNGNKRMRE VELLQTVDCC KKQHIFEAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-145	RAV family protein