PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA04549.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 23936 Da PI: 5.4863

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA04549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	49	101	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le F +++++ e++ ++A +lgL+ rqV vWFqNrR ++k OVA04549.1 49 KRKLTDEQVRLLELNFGNEHKLESERKDRIALELGLDPRQVAVWFQNRRVRWK 101 4589************************************************9 PP
2	HD-ZIP_I/II	115	4.4e-37	48	139	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv+lLE +F +e+kLe+erK ++a eLgl+prqvavWFqnrR R+ktk+lE++y++Lk ++ + e++rLe+ev++L+e+l++ OVA04549.1 48 RKRKLTDEQVRLLELNFGNEHKLESERKDRIALELGLDPRQVAVWFQNRRVRWKTKRLEEEYSKLKMVHEGVIVEKCRLESEVSKLKEQLMD 139 8***************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MDEIDDQMFL ISQPNPTLYT QLVPGEEESR CRRRRKKNKI EANDVGFRKR KLTDEQVRLL 60 ELNFGNEHKL ESERKDRIAL ELGLDPRQVA VWFQNRRVRW KTKRLEEEYS KLKMVHEGVI 120 VEKCRLESEV SKLKEQLMDA EKEIHKLSER SNDANINSTG SPSSSSFSME AGVGEFGVNG 180 FENFFYVPED NYVHGMEWVD LYGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	51	RRRRKKNKIEANDVGFRKRK
2	33	52	RRRRKKNKIEANDVGFRKRK
3	34	53	RRRRKKNKIEANDVGFRKRK
4	35	54	RRRRKKNKIEANDVGFRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-62	HD-ZIP family protein