PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA04348.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 473aa MW: 50263.1 Da PI: 7.9171

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA04348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.1e-12	47	73	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG C yG rC+F+H++ OVA04348.1 47 PGEPNCVYYMRTGSCGYGVRCRFNHPR 73 5789*********************96 PP
2	zf-CCCH	42.1	1.4e-13	94	119	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++tGtCk+G++CkF+H++ OVA04348.1 94 GEPVCQYFMKTGTCKFGSSCKFHHPR 119 6799********************96 PP
3	zf-CCCH	35.4	1.8e-11	140	165	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ OVA04348.1 140 GEKECSYYIKTGQCKFGETCKFHHPQ 165 7899********************97 PP
4	zf-CCCH	37.1	5.4e-12	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++rtG CkyG+ C+++H+p OVA04348.1 296 PGMPECRYYMRTGDCKYGSMCRYHHPP 322 5799*********************97 PP
5	zf-CCCH	31.6	2.8e-10	343	367	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +a++G Ck+G++CkF H++ OVA04348.1 343 AAPCTLYAQSGVCKFGPTCKFDHPM 367 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MHGRSHAMEG SQSDPSMDWN SAVPETGLEE SMWQLGLGSR NSYPERPGEP NCVYYMRTGS 60 CGYGVRCRFN HPRDRSTAAG AIRQGEGEYP EREGEPVCQY FMKTGTCKFG SSCKFHHPRF 120 EGGAMNSVLL NYYGYPLRPG EKECSYYIKT GQCKFGETCK FHHPQPSSAS VPAPAPEFYP 180 TVQSPLVPST QQFGGVAASW QVGRPPMLPG SFMQGTYGSV LLSAGMVPFS SWSPYPGPVG 240 QVASPSSQAT IGANPPFGVT RLSPSAPAYT GQNPPLPMPT GISSSSEKEN VYPERPGMPE 300 CRYYMRTGDC KYGSMCRYHH PPEWIAPNTI VLSPMGLPLR PGAAPCTLYA QSGVCKFGPT 360 CKFDHPMGSL SYSPSASSLT DMPVAPYPVG SSPATLAPSS SSSELRPEFI AGSSKDSFST 420 RVPSTENTSS GSVGSIFSKS GSVPHSGVQL SGQSSAPSSG SSSGHGGEAR SSS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MHGRSHAMEG SQSDPSMDWN SAVPETGLEE SMWQLGLGSR NSYPERPGEP NCVYYMRTGS  60
CGYGVRCRFN HPRDRSTAAG AIRQGEGEYP EREGEPVCQY FMKTGTCKFG SSCKFHHPRF  120
EGGAMNSVLL NYYGYPLRPG EKECSYYIKT GQCKFGETCK FHHPQPSSAS VPAPAPEFYP  180
TVQSPLVPST QQFGGVAASW QVGRPPMLPG SFMQGTYGSV LLSAGMVPFS SWSPYPGPVG  240
QVASPSSQAT IGANPPFGVT RLSPSAPAYT GQNPPLPMPT GISSSSEKEN VYPERPGMPE  300
CRYYMRTGDC KYGSMCRYHH PPEWIAPNTI VLSPMGLPLR PGAAPCTLYA QSGVCKFGPT  360
CKFDHPMGSL SYSPSASSLT DMPVAPYPVG SSPATLAPSS SSSELRPEFI AGSSKDSFST  420
RVPSTENTSS GSVGSIFSKS GSVPHSGVQL SGQSSAPSSG SSSGHGGEAR SSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-145	C3H family protein