PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA02923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 376aa MW: 41157.2 Da PI: 6.7732 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.3e-08 | 117 | 141 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaHg OVA02923.1 117 FKTKLCCKFRT-GTCPYITNCNFAHG 141 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.5 | 3.6e-06 | 191 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ OVA02923.1 191 YKGRHCKKFYTEEGCPYGDNCTFLHD 216 77888********************7 PP | |||||||
3 | zf-CCCH | 44.5 | 2.5e-14 | 251 | 276 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OVA02923.1 251 WKTRICNKWEMTGYCPFGSKCHFAHG 276 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence |
MDYGGEAGFS GGNVGQIIPE IPSSGSMDNW IPGLNDQAIW ATEDDYGLWN GDLSSDTPSN 60 SNYDGRQSQT RSGSEPPNKK SRNNSQGGDS IGSGFGRDFP SSANRSRDSR VIGKMFFKTK 120 LCCKFRTGTC PYITNCNFAH GIEELRKPPP NWQEIVAAQD EDRGLLSEPR EEHQIPSLSS 180 SGLSGESQRS YKGRHCKKFY TEEGCPYGDN CTFLHDEQSK ARESVAISLG PTIGSGYGNN 240 ANGSSQKPSN WKTRICNKWE MTGYCPFGSK CHFAHGLGEL HRYGGGLVDT DGRESSLAPP 300 DQKQVGVPSK TPMDSVVPST TSAPHADVYH MGIPSQRSSA VNQRPGQRPL QKWKGPDKIS 360 RIYGDWIDDN EMEPAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-117 | C3H family protein |