PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA02707.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 713aa MW: 77776.5 Da PI: 6.5065

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA02707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	282	302	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg OVA02707.1 282 PCPEFRK-GTCRQGDACEYAHG 302 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MCSGSKRKLF PTDSLMEGEL QNQKEGFFHN CSILLELSAS DDLISFRNSV EGKGSDVNEA 60 SLWYGRVIGA RKMALEERTP LMIAAMFGST EVLKYILSTG CVDVNQACGS DGATALHCAA 120 AGGSSASPEI VKLLLDASAD PNSVDAKGNK PGDLIAPGLK PSCFLRKKTL EMMLKGSSGN 180 SFVEGWASPE SFDETFNQPE EFQQLMQTTQ KDGNDKKEYP IDLTLPDIKN GIYGTDEFRM 240 YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGT CRQGDACEYA 300 HGVFECWLHP AQYRTRLCKD ETGCTRRVCF FAHKPEELRP LYASTGSAVP SPRSSSANVS 360 PLDMSNMSPL ALGSPSVLMH STSTPPMSPL AATSSPMGSG LWQNQASLVP PTLQLPGSRL 420 KTAMSARDME LDMDLLGLSQ YHHQQQQQQQ QMMDEISNLS SHTSWSNTLA TALAASSGSR 480 LGGVKPTNLE DVFGSLDPSV LSQLQGLSLK AATSQVQSPT GIQIRQNMNQ QQQQQLRSSY 540 PTNLSSSPVR ASSSFGLDSS GVAAINARSA AFAKRSQSFI DRGAVNRHPG LMGSAAMSTS 600 NLSDWGSPTG KLDWGVQGEE LNKLRKSASF GFRSNNIAMA SSSESMAVRS VDEPDVSWVQ 660 SLVKDVPPPV ALDRRFSLDE QQRQNQYHLT SGGLDMFSPC VEQLYMEQEQ MVA

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MCSGSKRKLF PTDSLMEGEL QNQKEGFFHN CSILLELSAS DDLISFRNSV EGKGSDVNEA  60
SLWYGRVIGA RKMALEERTP LMIAAMFGST EVLKYILSTG CVDVNQACGS DGATALHCAA  120
AGGSSASPEI VKLLLDASAD PNSVDAKGNK PGDLIAPGLK PSCFLRKKTL EMMLKGSSGN  180
SFVEGWASPE SFDETFNQPE EFQQLMQTTQ KDGNDKKEYP IDLTLPDIKN GIYGTDEFRM  240
YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGT CRQGDACEYA  300
HGVFECWLHP AQYRTRLCKD ETGCTRRVCF FAHKPEELRP LYASTGSAVP SPRSSSANVS  360
PLDMSNMSPL ALGSPSVLMH STSTPPMSPL AATSSPMGSG LWQNQASLVP PTLQLPGSRL  420
KTAMSARDME LDMDLLGLSQ YHHQQQQQQQ QMMDEISNLS SHTSWSNTLA TALAASSGSR  480
LGGVKPTNLE DVFGSLDPSV LSQLQGLSLK AATSQVQSPT GIQIRQNMNQ QQQQQLRSSY  540
PTNLSSSPVR ASSSFGLDSS GVAAINARSA AFAKRSQSFI DRGAVNRHPG LMGSAAMSTS  600
NLSDWGSPTG KLDWGVQGEE LNKLRKSASF GFRSNNIAMA SSSESMAVRS VDEPDVSWVQ  660
SLVKDVPPPV ALDRRFSLDE QQRQNQYHLT SGGLDMFSPC VEQLYMEQEQ MVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein