PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA01944.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 329aa MW: 37425.5 Da PI: 7.4995

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA01944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.1e-12	190	215	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C +Gd+CkF+H+ OVA01944.1 190 YQPDICKDYKETGYCGFGDSCKFMHD 215 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MADSSEPQPS AEPVCNFFRK PSKNKNIRKR AIDEEEEDED SRTEGSSLFQ KQKKPPKPDN 60 KLHFSTGTSS KRSVPGESNP EPDSRIFHFE SSKEIQVQHD SRATATLETE TDFSRDARAI 120 RERVLKQAEA ALKKKDKNPS DEKLYKGIHG YTDYKAGFRR EQTVAGEKAG GAHGPLRASA 180 HIRTSARWDY QPDICKDYKE TGYCGFGDSC KFMHDRGDYK SGWQMEREWE EAEKIRKRNL 240 ALGGDDDEDE KGRANVSDDD DDDSLPFACF ICRQSFVDPV VTKCKHYFCE HCALKHHSKN 300 KKCFVCNTPT LGIFNTAHEI KKKIASEGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-157	C3H family protein