PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA01119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 444aa MW: 48612.5 Da PI: 8.4126 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36 | 1.2e-11 | 48 | 73 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+F+H+ OVA01119.1 48 PGEPDCIYYLRTGLCGYGSNCRFNHP 73 5789*********************8 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtC++G++Ck++H++ OVA01119.1 92 QPDCQYFLKTGTCRFGATCKYNHPR 116 789********************96 PP | |||||||
3 | zf-CCCH | 31.2 | 3.7e-10 | 139 | 161 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ OVA01119.1 139 SCPYYMRTGACKFGFACKFHHPQ 161 6********************97 PP | |||||||
4 | zf-CCCH | 41.9 | 1.7e-13 | 282 | 307 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ OVA01119.1 282 DQPECQYYMKTGTCKFGPTCKFHHPK 307 689*********************96 PP | |||||||
5 | zf-CCCH | 33.6 | 6.5e-11 | 328 | 352 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +G+Ck+G++CkF H+ OVA01119.1 328 GQDVCSFYNLYGICKFGSTCKFDHP 352 6789********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence |
MPDNWKVKIN AVNASSDNLE EAMWRLKIQT QDKQNGIAAH SSLYPDRPGE PDCIYYLRTG 60 LCGYGSNCRF NHPSYPGQDA HYRGELPERA GQPDCQYFLK TGTCRFGATC KYNHPRDKHD 120 AGQVPLNMLG LPIRQEEKSC PYYMRTGACK FGFACKFHHP QPAALGSLSP ATGNPAYGST 180 GSSVAPPSSG LPYVGGLPAW SLPRTPYLSG PRMQGPQAYM PVVLSSSQGI IPAQQGWNTY 240 PGTANPVSSS FVYTPKHQDE LGSSGQVHML QTSAPQFPER PDQPECQYYM KTGTCKFGPT 300 CKFHHPKERL APLATSALGP FGLPLRPGQD VCSFYNLYGI CKFGSTCKFD HPLTGFYNYN 360 LSMPTLSIPD PPNFSYQKNS PKACSSENSP SKSSRSPDQN GKPEVTTTKH QNLDMKASED 420 PSKQAVSSVN TSQTPPESPQ DKSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-103 | C3H family protein |