PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OVA00473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya
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Family | C3H | ||||||||
Protein Properties | Length: 337aa MW: 37588.5 Da PI: 8.2016 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.4e-12 | 84 | 108 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f + G+C+yGd+C+FaHg OVA00473.1 84 FKTRLCAKFKA-GICPYGDNCNFAHG 108 79*********.*************9 PP | |||||||
2 | zf-CCCH | 20.9 | 6.3e-07 | 147 | 167 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC+ f + +C+yGdrC+F H OVA00473.1 147 LCKKFCNGEECPYGDRCNFLH 167 888888855************ PP | |||||||
3 | zf-CCCH | 41.7 | 1.9e-13 | 226 | 252 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C + tG+C++G++C+FaHg+ OVA00473.1 226 WKTRICIKWDTTGQCPFGEKCHFAHGQ 252 8************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence |
MSVPAPPPQF FAPFTAVNDA SMFWPQVPIE NEQSKQSNYT EFPPFKKPRN FEDSLSNSFQ 60 NQAMNPRMPP QNPPINRGIG RIFFKTRLCA KFKAGICPYG DNCNFAHGVE DIRKPPPNWQ 120 EIVASHEEDR TTGNWDEDQK IINRLKLCKK FCNGEECPYG DRCNFLHKDI GKCREDSTRF 180 RESSAISIGT TGSPGSNGIG SNQPDINGLL NSVADANWGI QKPVFWKTRI CIKWDTTGQC 240 PFGEKCHFAH GQAELQKYGG QNEMETGSAT IASLKCVPNS SNDAAPSSTG TGVLCKQQVQ 300 IKKCLLKWKG TKKISRIYAD WIDDMPLPLS SPTNVES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-83 | C3H family protein |