PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA00464.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 594aa MW: 68183.3 Da PI: 6.112

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA00464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	89	111	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C+ GdrC+F Hgp OVA00464.1 89 VPCYFYFN-GFCNKGDRCSFLHGP 111 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MEDEIQKRNT DCVYFLASPL TCKKGIECEY RHSEVARLNP RDCYYWLAGN CLNPTCAFRH 60 PPLDGRPETS SEPAALPQQS SLPVNKVHVP CYFYFNGFCN KGDRCSFLHG PNDVSPTPKV 120 PKTTPTVNDA RPLENKTSTG SDTLTTVVEA PSNPPRTSKS VVNVQFKPQE DVQQSVPSNA 180 VERSPSLQTS VPDCEEEAVK SDTPLPAEDF IGQSLSSEQS SEEQVEEEHI EREEWWESSP 240 GLDVLVDNGS EGYEDDQEYL PIHDAEIRRL HDHLLQYDYE DPVGYDPMEY TGAGVLYEDG 300 VYDMYNGLDD EDISDYCRVV PKPSMDRNLD PRIFQKRKFL PRELEVNGRN GMDLRDHLRK 360 RKRIDGHQPS RNPRKRGPSF LEEKNQERPK RHHMGHPHRR RLASEVGHNM IGFDREKDRE 420 LNGVNRRSSL RQSESRRNRS RQHEKDKRRQ FRSHLPSEVS AKDPISREMR GGQDSTTTLF 480 TGPKTLAQIR EEKRKARENG ETFGNTRRRS SKIMTSKDFE GPKPLSEILK DKRRLGSVSD 540 DGSSTRSKQE DHRHVECERG NHEYFGRDRI GLMIDEDEDD DEGGLEKKLA SIYA

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MEDEIQKRNT DCVYFLASPL TCKKGIECEY RHSEVARLNP RDCYYWLAGN CLNPTCAFRH  60
PPLDGRPETS SEPAALPQQS SLPVNKVHVP CYFYFNGFCN KGDRCSFLHG PNDVSPTPKV  120
PKTTPTVNDA RPLENKTSTG SDTLTTVVEA PSNPPRTSKS VVNVQFKPQE DVQQSVPSNA  180
VERSPSLQTS VPDCEEEAVK SDTPLPAEDF IGQSLSSEQS SEEQVEEEHI EREEWWESSP  240
GLDVLVDNGS EGYEDDQEYL PIHDAEIRRL HDHLLQYDYE DPVGYDPMEY TGAGVLYEDG  300
VYDMYNGLDD EDISDYCRVV PKPSMDRNLD PRIFQKRKFL PRELEVNGRN GMDLRDHLRK  360
RKRIDGHQPS RNPRKRGPSF LEEKNQERPK RHHMGHPHRR RLASEVGHNM IGFDREKDRE  420
LNGVNRRSSL RQSESRRNRS RQHEKDKRRQ FRSHLPSEVS AKDPISREMR GGQDSTTTLF  480
TGPKTLAQIR EEKRKARENG ETFGNTRRRS SKIMTSKDFE GPKPLSEILK DKRRLGSVSD  540
DGSSTRSKQE DHRHVECERG NHEYFGRDRI GLMIDEDEDD DEGGLEKKLA SIYA