PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OVA00361.1

Organism

Macleaya cordata

Taxonomic ID

56857

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Macleaya

Family

C3H

Protein Properties

Length: 844aa MW: 92205 Da PI: 4.5455

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OVA00361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	246	265	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC+ffa+ G+C G++C+F H OVA00361.1 246 LCNFFAK-GWCIKGSSCRFLH 265 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MPSPSSGDDD DMSAPELSDK GSDSEPEEEP EEEPEEEEPG EEEEPEEEEE PEEEEGPEEE 60 EPEDDDSDGD TGEEEEEEKS DDDDRNDSSQ EIESEGHDED LQPEKSEGDA PEDNGECHSF 120 DPLNPLPATQ GVGAQPEKEA SIEACGNDVL KHDKEDPSGN GAHLSKTESV NYTKSSSSNE 180 KELAADTLLR NDSGDKVPNI GSEEETRQSR EDVKVRGPSL ITPQLRPRSL SPGADSEDRN 240 KRPAILCNFF AKGWCIKGSS CRFLHKKDGV VNTSNLSKGD DETVESLKGE LQEDAGLRQN 300 TVKSRFSSLE PLASSVVGYP SSSSHFSSEK ILVGEHEESR RWHTSSEEHR QLPLERYDPS 360 LLSSLKYVGA ANPRQDRFLD KYHSNASQVI QGDLQKFTSP SNDCPANPSS SAIQLNSFLG 420 EEYNQSSHVP LLHRNLNPHS DLIDNKSSGS REIVSGCSLA QNNSVPEYRL FSSGSVFSSS 480 IYGNHTFAYE KSFVEPGSQN LKIHPTFCDG HASPGSNSSM NSSFKNSLPP TGSSPSHRPF 540 ACPGTSPSQG SSPSRYQKPY GSDRGYYASR STSLPRSSSS PFYSRPEPDN LPLHGVPMDP 600 VISVGHKLQA TSYNWEPSVP FRPSFHLPPN FISSPSSQYD PLLDSIELPN IGDRSLQSSS 660 LSQRAIIHNT SQINVDSVCL DQLSQSGVSD KSLHTHDVAA DTTAAEAMGV CVAGRQNKSS 720 MPEEKNPLKP GSAVNASSAN EVGLDHNLGQ IDGVKHKKEP KTQKHFRSAL VDFVKELVKP 780 SWREGQLSKD AHNMVVKKAV EKVLSTLQPH QIPCTPQSTN QYLSSSRPKL TKLVEGYIGK 840 YGKS

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MPSPSSGDDD DMSAPELSDK GSDSEPEEEP EEEPEEEEPG EEEEPEEEEE PEEEEGPEEE  60
EPEDDDSDGD TGEEEEEEKS DDDDRNDSSQ EIESEGHDED LQPEKSEGDA PEDNGECHSF  120
DPLNPLPATQ GVGAQPEKEA SIEACGNDVL KHDKEDPSGN GAHLSKTESV NYTKSSSSNE  180
KELAADTLLR NDSGDKVPNI GSEEETRQSR EDVKVRGPSL ITPQLRPRSL SPGADSEDRN  240
KRPAILCNFF AKGWCIKGSS CRFLHKKDGV VNTSNLSKGD DETVESLKGE LQEDAGLRQN  300
TVKSRFSSLE PLASSVVGYP SSSSHFSSEK ILVGEHEESR RWHTSSEEHR QLPLERYDPS  360
LLSSLKYVGA ANPRQDRFLD KYHSNASQVI QGDLQKFTSP SNDCPANPSS SAIQLNSFLG  420
EEYNQSSHVP LLHRNLNPHS DLIDNKSSGS REIVSGCSLA QNNSVPEYRL FSSGSVFSSS  480
IYGNHTFAYE KSFVEPGSQN LKIHPTFCDG HASPGSNSSM NSSFKNSLPP TGSSPSHRPF  540
ACPGTSPSQG SSPSRYQKPY GSDRGYYASR STSLPRSSSS PFYSRPEPDN LPLHGVPMDP  600
VISVGHKLQA TSYNWEPSVP FRPSFHLPPN FISSPSSQYD PLLDSIELPN IGDRSLQSSS  660
LSQRAIIHNT SQINVDSVCL DQLSQSGVSD KSLHTHDVAA DTTAAEAMGV CVAGRQNKSS  720
MPEEKNPLKP GSAVNASSAN EVGLDHNLGQ IDGVKHKKEP KTQKHFRSAL VDFVKELVKP  780
SWREGQLSKD AHNMVVKKAV EKVLSTLQPH QIPCTPQSTN QYLSSSRPKL TKLVEGYIGK  840
YGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-29	C3H family protein