PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022159799.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

GATA

Protein Properties

Length: 541aa MW: 60362.6 Da PI: 7.5421

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022159799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	42.9	6.7e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ +TplWR+gp ++ LCnaCG ++r kg+ XP_022159799.1 7 CCHCGVASTPLWRNGPPDKPVLCNACGSRWRTKGT 41 99************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MGKHGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEYEDN 60 RVSRVKSISI NKNKEVKLLK RKLQQADGSI EWNFPDQCRG FHRVLDEDAS NRSSSGSAIS 120 NTESCAHFSS ADASDLTGPA QSIVWETMVP SRKRTCVSRP KQSPVEKLTK DLYSILHEQR 180 SSYFSGTSED DLLFESEKPM VSVEIGHGSI LIKHPSSIAR EEESEASSVS VDNKQYLVNE 240 VHSPHSATVR VRGENKGMNF PTSRIGKMKN PSGSGVQQEQ MKRDDSHLEN LQILGNHNSP 300 LCDVDINDVI NFGEFGRQLT NEEQQQLMKY LPQVDVAELP ETLKSMFDSS YFKENLTSFQ 360 QLLREGVFDV SFLGTKTEDC KTLKRLVLYN SSESKWVERY HQLKKCKNGC KGSFLSNANA 420 SASSNFMNVK RLRESYNQNI PEVKTIMKSP KRLVMKENKD PGENDGSCFS PRSLFALPPD 480 GSSLMLESLN FAEASSDQDL LLDVRSNSSF PQAELLHPTS RSGGRQASTC SSSVHPHLVH 540 H

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MGKHGPCCHC GVASTPLWRN GPPDKPVLCN ACGSRWRTKG TLANYTPLHA RADPDEYEDN  60
RVSRVKSISI NKNKEVKLLK RKLQQADGSI EWNFPDQCRG FHRVLDEDAS NRSSSGSAIS  120
NTESCAHFSS ADASDLTGPA QSIVWETMVP SRKRTCVSRP KQSPVEKLTK DLYSILHEQR  180
SSYFSGTSED DLLFESEKPM VSVEIGHGSI LIKHPSSIAR EEESEASSVS VDNKQYLVNE  240
VHSPHSATVR VRGENKGMNF PTSRIGKMKN PSGSGVQQEQ MKRDDSHLEN LQILGNHNSP  300
LCDVDINDVI NFGEFGRQLT NEEQQQLMKY LPQVDVAELP ETLKSMFDSS YFKENLTSFQ  360
QLLREGVFDV SFLGTKTEDC KTLKRLVLYN SSESKWVERY HQLKKCKNGC KGSFLSNANA  420
SASSNFMNVK RLRESYNQNI PEVKTIMKSP KRLVMKENKD PGENDGSCFS PRSLFALPPD  480
GSSLMLESLN FAEASSDQDL LLDVRSNSSF PQAELLHPTS RSGGRQASTC SSSVHPHLVH  540
H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-148	GATA family protein