PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022159234.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 1033aa MW: 115455 Da PI: 4.9008

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022159234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_022159234.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_022159234.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSEED RPVEQPKFPT 240 TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLL AGNEELAEGS GATRALLASY AQTPRQGMTP FRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG 420 VGLTPRTGMT PARGDAYSFG MTPKGTPIRD ELHINEDMDV LDSAKLESQR QADLRRNLRL 480 GLGSLPQPKN EYQVVMQPIP EDKEEPEEMI EEDMSDRIAR ERAEEEARQQ ALLRKRSKVL 540 QRELPRPPTA SLELIRNSLM RADGDKSSFV PPTPIEQADE IIRKELLALL EHDNAKYPID 600 EKINKEKKKG SKRIGNGPAA AIPTIEDFEE NEMEEADHLI KQEAQYICVA MGHEIESLDE 660 FVEAHKTCLN DLMYFPTRNA YGLSSVAGNL EKLAALQDEF EYVKKKMDDD TEKAVRLEKK 720 VKVLTHGYET RAKTSLWPQI EVTFKQIDTA ATELECFEAL QKQELLAASH RISGIWEEVH 780 KQKELERTLQ LRYGNLLADL EKMQKVMDEH KARALKEEEI AAANRALQLA AVEAEAEANQ 840 TIGVNVESSE AVSALAVDHE NSMPVTSSPN EIMGEQPNSS EGQGHEHGTS SAMDIGLEKE 900 NAAVSSDIGL SDNKPTPATE NTSFQDNGFE NSDQSHTGDV PSQELSAPPA NGTPEVTTVV 960 ENKITDDLVH GVAIENAEIV EGVKDVENQL PVIESGSSDV NSTHSDSAVP AFSNEDGPAT 1020 NDDVEIPRVA SND

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSEED RPVEQPKFPT  240
TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLL AGNEELAEGS GATRALLASY AQTPRQGMTP FRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG  420
VGLTPRTGMT PARGDAYSFG MTPKGTPIRD ELHINEDMDV LDSAKLESQR QADLRRNLRL  480
GLGSLPQPKN EYQVVMQPIP EDKEEPEEMI EEDMSDRIAR ERAEEEARQQ ALLRKRSKVL  540
QRELPRPPTA SLELIRNSLM RADGDKSSFV PPTPIEQADE IIRKELLALL EHDNAKYPID  600
EKINKEKKKG SKRIGNGPAA AIPTIEDFEE NEMEEADHLI KQEAQYICVA MGHEIESLDE  660
FVEAHKTCLN DLMYFPTRNA YGLSSVAGNL EKLAALQDEF EYVKKKMDDD TEKAVRLEKK  720
VKVLTHGYET RAKTSLWPQI EVTFKQIDTA ATELECFEAL QKQELLAASH RISGIWEEVH  780
KQKELERTLQ LRYGNLLADL EKMQKVMDEH KARALKEEEI AAANRALQLA AVEAEAEANQ  840
TIGVNVESSE AVSALAVDHE NSMPVTSSPN EIMGEQPNSS EGQGHEHGTS SAMDIGLEKE  900
NAAVSSDIGL SDNKPTPATE NTSFQDNGFE NSDQSHTGDV PSQELSAPPA NGTPEVTTVV  960
ENKITDDLVH GVAIENAEIV EGVKDVENQL PVIESGSSDV NSTHSDSAVP AFSNEDGPAT  1020
NDDVEIPRVA SND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDTRHRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein