PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022158201.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

Trihelix

Protein Properties

Length: 643aa MW: 73413.2 Da PI: 6.7421

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022158201.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.2	5.8e-15	123	183	2	66
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+++e laL+++r++m++ + ++ + We+vs+k+ e gf+r++ +Ckek+e+ ++++ i+ XP_022158201.1 123 WSNDELLALLRIRSNMDNCFPES----TNWEHVSRKLGEVGFRRTADKCKEKFEEESRYFNHINY 183 *******************99....9******************************98875 PP
2	trihelix	91	1.3e-28	502	604	1	86
trihelix 1 rWtkqevlaLiearr............emeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 rW+++evlaL+++r + +++ ++g+ +k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+ XP_022158201.1 502 RWPRDEVLALVNVRCslynngvcggggDQDQSGGSGSgeqgasSKAPLWERISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSR 595 8************7888888888775555555432445555******************************************8.9999 PP trihelix 78 tcpyfdqle 86 tcpyf+ql XP_022158201.1 596 TCPYFHQLS 604 *******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MFEGSVSEQL HQFLTPRTTT TPTPNSSSLP LPLNFAPNLI NFHHPFFDSY NITNPLHPHL 60 LHSPNPPHQN NGSGHDEEKP DATPTTTATE LHAVAMDLEA GRDNNNNTNR SILMDDHHQQ 120 HHWSNDELLA LLRIRSNMDN CFPESTNWEH VSRKLGEVGF RRTADKCKEK FEEESRYFNH 180 INYNKTCRFL THELNYPPPH HHQDQDRDDQ DHDHHHLLFP GGDEKPDDPS VVVGAPEVEE 240 GEEENGANFR DRDEEGEDMK IESTAMRSRK KRQNRKRRRM MRQKEFEILK EYCEEIVKKM 300 MVQQEEIHSK LLHDMLKREE EKVAKEESWK KQQMERLHRE LEVMAHEQAM AGDRQATIIE 360 ILNQITNSTP FSSSQAKKEL QNLILSLNNN NTNNDNNATN YNNSPSSSSL IQTQTNSSPN 420 KNQEVIANLA SSSSLMAALP PHENSSSFTS QTDPKNPKNP YSLTKILAPQ DPNSHPPPAS 480 LQKLPQNPKT RDHKELDDLG KRWPRDEVLA LVNVRCSLYN NGVCGGGGDQ DQSGGSGSGE 540 QGASSKAPLW ERISQGMLQL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SLDSRTCPYF 600 HQLSNLYNQG GGIKRLENCP AVSPENHSDH SENLPNSSQR IAC

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MFEGSVSEQL HQFLTPRTTT TPTPNSSSLP LPLNFAPNLI NFHHPFFDSY NITNPLHPHL  60
LHSPNPPHQN NGSGHDEEKP DATPTTTATE LHAVAMDLEA GRDNNNNTNR SILMDDHHQQ  120
HHWSNDELLA LLRIRSNMDN CFPESTNWEH VSRKLGEVGF RRTADKCKEK FEEESRYFNH  180
INYNKTCRFL THELNYPPPH HHQDQDRDDQ DHDHHHLLFP GGDEKPDDPS VVVGAPEVEE  240
GEEENGANFR DRDEEGEDMK IESTAMRSRK KRQNRKRRRM MRQKEFEILK EYCEEIVKKM  300
MVQQEEIHSK LLHDMLKREE EKVAKEESWK KQQMERLHRE LEVMAHEQAM AGDRQATIIE  360
ILNQITNSTP FSSSQAKKEL QNLILSLNNN NTNNDNNATN YNNSPSSSSL IQTQTNSSPN  420
KNQEVIANLA SSSSLMAALP PHENSSSFTS QTDPKNPKNP YSLTKILAPQ DPNSHPPPAS  480
LQKLPQNPKT RDHKELDDLG KRWPRDEVLA LVNVRCSLYN NGVCGGGGDQ DQSGGSGSGE  540
QGASSKAPLW ERISQGMLQL GYKRSAKRCK EKWENINKYF RKTKDVNKKR SLDSRTCPYF  600
HQLSNLYNQG GGIKRLENCP AVSPENHSDH SENLPNSSQR IAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	279	KKRQNRKRRR
2	275	279	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-46	Trihelix family protein