PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022156994.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 586aa    MW: 65327.1 Da    PI: 6.7876
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022156994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-2427128199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_022156994.1  27 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQDLIAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGD 117
                     99****************************9543..445568************************************************..348 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++el+v+v+r+
  XP_022156994.1 118 NGELRVGVRRR 128
                     9999*****97 PP
2Auxin_resp99.73.9e-33153231182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha++t++ F v+Y+Pr+   +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g +d++p +W+nS WrsL
  XP_022156994.1 153 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGAEDISP-HWHNSSWRSL 231
                     689***************6..89**********************************************99.*********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    
MPESNQSEPN SLDPCPPEPA RPVVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ  60
ATPTQDLIAK DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLSAGDS FVFLRGDNGE  120
LRVGVRRRAR QLTSMPSSVI SSQSMHLGVL ATASHAVTTQ TRFVVYYKPR TCQFIISLNK  180
YLEAVNNKFS VGMRFNMSFE GEDSPERRFS GTIIGAEDIS PHWHNSSWRS LRVQWDEQTT  240
IPRPDRVSPW DIEPLTSSAA TNLTQPVAKN KRPRQPTETA LDGADFTKPA LWDSGLAQPH  300
DGKQCSNAAE SRKGENNELC QHRETDTISI STCVSRTQTD GAWLSSTQSN SHKHPVNDMA  360
LDYKTVSGCG WSFLSGPTPP SNSLVKLSDD QILDPTENGR KGETVASCRL FGIDLNHLAR  420
LPAEKASSQL SSVSSETEGR ISTLSVAHSD KKSDILEVSI ERTSEPLQAS LKESQSNQSS  480
STNTRSRTKV HMHGMAVGRA VDLTILEGYD QLIDELEKMF DVRGQLCARD KWEIVYTDDE  540
GDIMLVGDDP WEEFCNMVRR IFICSREQVK KMSSRSKQLP SEVEEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein