PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022156118.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARR-B

Protein Properties

Length: 398aa MW: 45559.3 Da PI: 6.9478

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022156118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	72.5	6.1e-23	187	240	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp+l W++eLH+rF++a++ L G++kA Pk+il++m+v+gL e++ SHLQk+Rl XP_022156118.1 187 KPKLIWSEELHNRFLQAIKAL-GIDKAHPKEILHHMNVPGLRKENISSHLQKFRL 240 79*****************.******************************8 PP
2	Myb_DNA-binding	34.2	5.8e-11	190	239	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 + W++e++ ++++a+k lG + ++k I ++m+ g+ +++ s++qk++ XP_022156118.1 190 LIWSEELHNRFLQAIKALGIDkaHPKEILHHMNvPGLRKENISSHLQKFR 239 56**********************************************97 PP
3	Response_reg	45.5	4.1e-16	15	121	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vd + + ++++ ++l gy +v +a + al+++ +e+d +lil+ + +p+m +ell+++++ + klpi+++++ ++ + l +l G XP_022156118.1 15 VLVVDHDSVTLKVVSKMLGVCGY-QVVTANCAIGALNIAqeREEDLHLILTELHLPDMGRYELLEKMNQTS-KLPIVIMSTDDDGITKLGCLFKG 107 89*******************.666666666666666226666******************9988.9****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a +l+Kp ++++ XP_022156118.1 108 ALLYLVKPLTIKNV 121 ******998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MELTKKWMLN EVIRVLVVDH DSVTLKVVSK MLGVCGYQVV TANCAIGALN IAQEREEDLH 60 LILTELHLPD MGRYELLEKM NQTSKLPIVI MSTDDDGITK LGCLFKGALL YLVKPLTIKN 120 VRTLWQFSFI KGRERTILVE VPNRVREESI DENESENDSK RNEKKKFQKI SSREAEEDEI 180 DSTVVKKPKL IWSEELHNRF LQAIKALGID KAHPKEILHH MNVPGLRKEN ISSHLQKFRL 240 SLKRDRGISK TSILGEESVQ LSNQQYGRQV PSNIGVFMAK PSFGQESQPQ LSNNLPSSSI 300 NSNLFGSHDE VSFESLNNGN MNRSCYAKAI SNDFIQQRSL DQMKCQNLFE CKREEMIMST 360 IHQPPQMEDR HCMFKVDAGQ LDGIFDMVKD YTINLHDI

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MELTKKWMLN EVIRVLVVDH DSVTLKVVSK MLGVCGYQVV TANCAIGALN IAQEREEDLH  60
LILTELHLPD MGRYELLEKM NQTSKLPIVI MSTDDDGITK LGCLFKGALL YLVKPLTIKN  120
VRTLWQFSFI KGRERTILVE VPNRVREESI DENESENDSK RNEKKKFQKI SSREAEEDEI  180
DSTVVKKPKL IWSEELHNRF LQAIKALGID KAHPKEILHH MNVPGLRKEN ISSHLQKFRL  240
SLKRDRGISK TSILGEESVQ LSNQQYGRQV PSNIGVFMAK PSFGQESQPQ LSNNLPSSSI  300
NSNLFGSHDE VSFESLNNGN MNRSCYAKAI SNDFIQQRSL DQMKCQNLFE CKREEMIMST  360
IHQPPQMEDR HCMFKVDAGQ LDGIFDMVKD YTINLHDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-45	ARR-B family protein