PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022155412.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

SBP

Protein Properties

Length: 328aa MW: 35893.6 Da PI: 8.6723

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022155412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127	7.5e-40	50	126	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_022155412.1 50 CLVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 126 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MYLRLGGICN MGEGSMDDIK GTRVTLIESS SSRLMKRSRA PGGGAQVPLC LVDGCSSDLS 60 KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRFHSL VEFDDRKRSC RKRLDGHNRR 120 RRKPQPASMA LNAGRFLYGN QGPRFLPFGN QLLPASDNVS SSWIGAIKPE NNAPLCGSNT 180 QFGFADRRKD MLPGSLASDY KEKQLAISYI PIGLLPKSSN IQPFLDVGSS NGENVQKVLG 240 NGSNRFFDSD CALSLLSTPV EPGEINLSSM VQPNLIPPAH FIHSDSLGLE SDPGNSGLVS 300 DGSSDANIRC YSTFQIGPDG SSVDLFRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	123	RKRSCRKRLDGHNRRRRK
2	106	124	RKRSCRKRLDGHNRRRRKP
3	107	125	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-49	SBP family protein