PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022155146.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 677aa    MW: 75152.4 Da    PI: 6.4681
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022155146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-21128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++ ++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  XP_022155146.1 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHRNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 218
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_022155146.1 219 NGELRVGVRR 228
                     999*****97 PP
2Auxin_resp102.55.2e-34254336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+s F v+++k+++a ++k+svGmRfkm+fe+e+++er++sGt+vg+ d  +  W+nS WrsLk
  XP_022155146.1 254 ASHAISTGTLFSVFYKPRTSRSTFLVSLNKYLEAQSHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWTNSDWRSLK 336
                     789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    
MSFSAASNLP SGGPNSGSSS DALYRELWHA CAGPLVTLPR QDERVYYFPQ GHMEQLEASM  60
HQGSEQQMPS FNLPPKILCK VVNVVLRAEP DTDEVYAQIT LLPESNQSEV TSPDPVLPEP  120
TRCNVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHRNQWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSTFLVS LNKYLEAQSH KLSVGMRFKM  300
RFEGEEVPER SFSGTIVGLG DNASPGWTNS DWRSLKVQWD EPSSILRPDK VSAWELEPLV  360
ASNSLSSQPT QRNKRPRPTV LPSPSPDAAV LGGWKPTVES SAFSYTEPHR GRDLYSSPKF  420
SSAAASNSLG FNGNGSLGAV SSNCTYWSNT NRVENVMDTS AKREPIEKKQ NSRNGCRLFG  480
IQLLGNSNLE EASPVSTPKM AGEDRPVPPV DAEFDQHSEP SNIHRSDIPS VSCDADKSCL  540
VSPLESQNRQ IRSCTKVHMQ GIAVGRAVDL TRFNQYDDLL TKLEEMFDIE GELCGSVKKW  600
QVVYTDDEDD MMMVGDDPWN EFCSMVRKIF IYTTEEVKRL SPKIKLPLGG ETKLNKPDSD  660
TVANHTEDQS SIVGSDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein