PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022154632.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 965aa MW: 106207 Da PI: 5.9954

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022154632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.1e-06	560	579	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr++ + G C+ Gd+CkF+H XP_022154632.1 560 YCRHYIK-GRCQEGDKCKFSH 579 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence
MEDAHFEAPI LVESEFFFPP HRRSHLRSET YRTLVRILSP FCDNTNVSLA TEFDPRELRA 60 AYSSHLRHTT VEPLGQQVGE AFVRAETGES GTEKVTVVED GLGMNSLEDG WFHHSEVTTD 120 VVNDTTAVEI SGNVGDERKF SGAISPGNHC VHEENHREEL EAEHIVEGNK VPVDENNSNN 180 MRASDQKTGG NDQIFQEEIA DHQLVMAEED VTIIQKLSGT IILLDGNSIG DKPKEDNQEN 240 RLLMVGNGMH EWPESQLKES ESEGIVPMPD LDRSHVSSFD AIEVEDGEKC SEKVSETDPS 300 YLEKEIPCEA YGQRKASDDK TISMVVDASK VKHKMLLEDM QMDKCTNENE DIEEGEICGD 360 FSTYEILEDP QVLAEKVVDI QISEDIINGN RLPSIESNGI ANKPASFSDT TEYASHENKE 420 ESKLNNSSME AAYKRGSFVS KKMVTSTNED KNDFMLEERR YKVKDSGTKK AMDSFIERVR 480 NQVLRNQVPS EPASGEKKIV STEKETGACD KKKRGPLSEG RKERKKILKR KKRAEKNRKL 540 GVKRLKLHPV TVSKPKPVVY CRHYIKGRCQ EGDKCKFSHQ TIPLTKSTPC SYFARHSCMK 600 GDDCPFDHQL SKYPCSNFVS KGSCPRGDTC MFSHKILPQE ESTSTPNLKT EPKPPQILDI 660 SDSQKKLDIS GTSCNRTPLG GTLPKKPTGL PPVGINFQKT TGPPPVGINF LSFGKSSKTE 720 PVQSSQVRND NVEGGNALNR SGNSDEILRE ILPETAPKGI NFLSFGKTSL KSNSEKLVTS 780 SSYNDATIPS GNRIEVVSKT GHDFNELLKK VQIATPKLTN LLSPKAPIGN YAPTELASSS 840 SNSKMGSDLS VQINESTYDK YGSSALLPRL PGNLISCGQS SDSLASSMYK GTPNSAQKAL 900 LSTLAFAAQY ESLMNKGKSS GSPAFSNEGN KEAKNENVGG SLQNDQAKAS KLLSILLGVG 960 SKSNL

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence

MEDAHFEAPI LVESEFFFPP HRRSHLRSET YRTLVRILSP FCDNTNVSLA TEFDPRELRA  60
AYSSHLRHTT VEPLGQQVGE AFVRAETGES GTEKVTVVED GLGMNSLEDG WFHHSEVTTD  120
VVNDTTAVEI SGNVGDERKF SGAISPGNHC VHEENHREEL EAEHIVEGNK VPVDENNSNN  180
MRASDQKTGG NDQIFQEEIA DHQLVMAEED VTIIQKLSGT IILLDGNSIG DKPKEDNQEN  240
RLLMVGNGMH EWPESQLKES ESEGIVPMPD LDRSHVSSFD AIEVEDGEKC SEKVSETDPS  300
YLEKEIPCEA YGQRKASDDK TISMVVDASK VKHKMLLEDM QMDKCTNENE DIEEGEICGD  360
FSTYEILEDP QVLAEKVVDI QISEDIINGN RLPSIESNGI ANKPASFSDT TEYASHENKE  420
ESKLNNSSME AAYKRGSFVS KKMVTSTNED KNDFMLEERR YKVKDSGTKK AMDSFIERVR  480
NQVLRNQVPS EPASGEKKIV STEKETGACD KKKRGPLSEG RKERKKILKR KKRAEKNRKL  540
GVKRLKLHPV TVSKPKPVVY CRHYIKGRCQ EGDKCKFSHQ TIPLTKSTPC SYFARHSCMK  600
GDDCPFDHQL SKYPCSNFVS KGSCPRGDTC MFSHKILPQE ESTSTPNLKT EPKPPQILDI  660
SDSQKKLDIS GTSCNRTPLG GTLPKKPTGL PPVGINFQKT TGPPPVGINF LSFGKSSKTE  720
PVQSSQVRND NVEGGNALNR SGNSDEILRE ILPETAPKGI NFLSFGKTSL KSNSEKLVTS  780
SSYNDATIPS GNRIEVVSKT GHDFNELLKK VQIATPKLTN LLSPKAPIGN YAPTELASSS  840
SNSKMGSDLS VQINESTYDK YGSSALLPRL PGNLISCGQS SDSLASSMYK GTPNSAQKAL  900
LSTLAFAAQY ESLMNKGKSS GSPAFSNEGN KEAKNENVGG SLQNDQAKAS KLLSILLGVG  960
SKSNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	511	533	KKKRGPLSEGRKERKKILKRKKR
2	511	536	KKKRGPLSEGRKERKKILKRKKRAEK
3	512	534	KKKRGPLSEGRKERKKILKRKKR
4	524	546	RKKILKRKKRAEKNRKLGVKRLK
5	529	556	KRKKRAEKNRKLGVKRLKLHPVTVSKPK
6	530	557	KRKKRAEKNRKLGVKRLKLHPVTVSKPK