PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022152684.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 349aa MW: 38138.2 Da PI: 7.0619

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022152684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ +G g+W+++++ g+ R++k+c++rw +yl XP_022152684.1 14 RGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	45.4	1.9e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E l+v+++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_022152684.1 67 RGSFSHQEAALIVQLHSILGNR-WAQIAKQLP-GRTDNEVKNFWNS 110 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SHQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKLISPE 120 VSALATLSGH LQNPNSPNNE GFFILNANPN LILATSGHQD QPCLSNSTTP PSLLQGFDLI 180 DYKLDQFTNN LNPNGSFLHL LPSVSPPSNF FPHDPTMWPP SAGYQPVTGG EFVVPSTVLP 240 QYIDGSFLHP TTMPKLCEVG DENLCLVQQT SAPLNQVDPT TAKLSTFAIG YSPQDQCLAA 300 NQMAMEQIDA IMSSILQNQS CSSLSLGSSG LSSGQLATHP DLVSLSWGA

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SHQEAALIVQ LHSILGNRWA QIAKQLPGRT DNEVKNFWNS NIKKKLISPE  120
VSALATLSGH LQNPNSPNNE GFFILNANPN LILATSGHQD QPCLSNSTTP PSLLQGFDLI  180
DYKLDQFTNN LNPNGSFLHL LPSVSPPSNF FPHDPTMWPP SAGYQPVTGG EFVVPSTVLP  240
QYIDGSFLHP TTMPKLCEVG DENLCLVQQT SAPLNQVDPT TAKLSTFAIG YSPQDQCLAA  300
NQMAMEQIDA IMSSILQNQS CSSLSLGSSG LSSGQLATHP DLVSLSWGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	5e-79	MYB family protein