PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022152604.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28279.3 Da    PI: 6.6676
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022152604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  XP_022152604.1  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                    79***********************************************96 PP
2K-box57.46.2e-208617014100
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++ ++e++ L++ei +Lq +q +llG+dL+ L +keLq+LeqqL+++l  +++kK  ll+eq+e+++ +e+++  en++Lr++++e
  XP_022152604.1  86 EKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLMVKEKK--LLMEQLEQSRVQEQRAMLENETLRRQVNE 170
                     456789***********************************************997..9************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS  60
GMKHTLSRYN RCVDSSEAAV DGRKVEKQEH EEVDILRDEI TTLQMKQLQL LGKDLTGLGF  120
KELQNLEQQL NEGLLMVKEK KLLMEQLEQS RVQEQRAMLE NETLRRQVNE LRCLFPPVDC  180
PLPAYLEYCS LEQKNIGLRS PDAACNSEIE RGDSDTTLHL GLPSHVYCKR KEAERDTHSN  240
NSGSQMGLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-69MIKC_MADS family protein