PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022152220.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MIKC_MADS

Protein Properties

Length: 269aa MW: 30460 Da PI: 5.177

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022152220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.8	6.7e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng++KKA+ELSvLCdaeva+++fsstg+lye+ss XP_022152220.1 9 KKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSS 59 68***********************************************96 PP
2	K-box	52.9	1.6e-18	100	175	25	100
K-box 25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ei +L+ + ++ G++L+ Ls++eLq+Le+qL +++ +i++kK+ llleq+++ + + +++ +en++Lrk+lee XP_022152220.1 100 EEEIVKLKLSCLQMRGQELDGLSFRELQNLENQLREGIVSIKDKKETLLLEQLQKCRSQGEMVISENETLRKQLEE 175 577888888889999**********************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MGRGRVEIKK IENINSRQVT FSKRRNGLMK KAKELSVLCD AEVAIVVFSS TGRLYEFSST 60 SMEHTLSRYR GQGMELDFPK ETLDHTTKLP PSDSNTKSSE EEIVKLKLSC LQMRGQELDG 120 LSFRELQNLE NQLREGIVSI KDKKETLLLE QLQKCRSQGE MVISENETLR KQLEELQQRN 180 NTPLPESSPF QRSYFSDSKT TSTNETEAET EAEENDRSEI SLHLGLSLDG QRKRKRSVEG 240 ATNDTTGSQV DLEGDAILAT DELSHHFGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	1e-50	MIKC_MADS family protein