PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022152161.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

AP2

Protein Properties

Length: 397aa MW: 44941.9 Da PI: 8.644

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022152161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.9	3.3e-15	71	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_022152161.1 71 SRFRGVSRHRWTGRFEAHLWDkLSWNMtqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 130 789****************888865666447**********************987 PP
2	AP2	50.7	4.5e-16	173	224	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t e+Aa+a++ a+ +++g XP_022152161.1 173 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEDAARAYDMAAIEYRG 224 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MEAEAPALVL KNEHNLRICW TEGQSQSMRR VKRRRRDPTS ASASASATAT DQTNKQQSSD 60 QAPTTTTKRS SRFRGVSRHR WTGRFEAHLW DKLSWNMTQK KKGKQVYLGA YDEEESAARA 120 YDLAALKYWG VTTITNFPTS EYEKEIEIMQ TMTKEEYLAS LRRKSSGFSR GVSKYRGVAR 180 HHHNGRWEAR IGRVFGNKYL YLGTYSTQED AARAYDMAAI EYRGINAVTN FDWSNYMAWL 240 KPPPPQATAN GAHTTSDPRK ELCTSGSFPA DETSLFKTHH FDTDSFHSLQ KQELLESCSA 300 PLSGYAKSSS PSALDLLLRS SFFKKLVETN SNLSADEVEN GEEAKTRVQL DSVFDEFGDV 360 FCDRIADVPF ACSSNKDLQE SELHSFFNGA FHRFKAA

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MEAEAPALVL KNEHNLRICW TEGQSQSMRR VKRRRRDPTS ASASASATAT DQTNKQQSSD  60
QAPTTTTKRS SRFRGVSRHR WTGRFEAHLW DKLSWNMTQK KKGKQVYLGA YDEEESAARA  120
YDLAALKYWG VTTITNFPTS EYEKEIEIMQ TMTKEEYLAS LRRKSSGFSR GVSKYRGVAR  180
HHHNGRWEAR IGRVFGNKYL YLGTYSTQED AARAYDMAAI EYRGINAVTN FDWSNYMAWL  240
KPPPPQATAN GAHTTSDPRK ELCTSGSFPA DETSLFKTHH FDTDSFHSLQ KQELLESCSA  300
PLSGYAKSSS PSALDLLLRS SFFKKLVETN SNLSADEVEN GEEAKTRVQL DSVFDEFGDV  360
FCDRIADVPF ACSSNKDLQE SELHSFFNGA FHRFKAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	35	MRRVKRRR
2	29	37	RRVKRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	5e-94	AP2 family protein