PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022151365.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HD-ZIP

Protein Properties

Length: 377aa MW: 40917.4 Da PI: 5.1023

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022151365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.1e-18	223	277	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_022151365.1 223 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 277 788899***********************************************98 PP
2	HD-ZIP_I/II	127	8.3e-41	223	313	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk XP_022151365.1 223 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELR-ALK 313 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MELALSLGDT PTNNNKPFGF LSKPSKLSSS SSASPFMALG FCVGLARDSA SASASGSGSG 60 SASIHDDQGR EVREEDDDEE EDEEDDDDER IILPGSGSGS DPPVQLDLLP PAPVPRSHHS 120 SSSHLPFPWL SDHLMAERGC SDGGAERVLD VNRLPAVGPA EETDDRAAAA AAGMSSPNSA 180 VSSFQMDFGV RNGGGSKRSS DFEMETERAS SRISDDDENG SARKKLRLSK EQSAFLEESF 240 KEHSTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLRR CCETLTEENR 300 RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATTA PAPVAKTTSA TATNPSALCL 360 ANKPRILPFP HLHQAAS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MELALSLGDT PTNNNKPFGF LSKPSKLSSS SSASPFMALG FCVGLARDSA SASASGSGSG  60
SASIHDDQGR EVREEDDDEE EDEEDDDDER IILPGSGSGS DPPVQLDLLP PAPVPRSHHS  120
SSSHLPFPWL SDHLMAERGC SDGGAERVLD VNRLPAVGPA EETDDRAAAA AAGMSSPNSA  180
VSSFQMDFGV RNGGGSKRSS DFEMETERAS SRISDDDENG SARKKLRLSK EQSAFLEESF  240
KEHSTLNPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLRR CCETLTEENR  300
RLQKELQELR ALKTSQPFYM QLPATTLTMC PSCERVATTA PAPVAKTTSA TATNPSALCL  360
ANKPRILPFP HLHQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	280	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-75	HD-ZIP family protein