PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022151327.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

AP2

Protein Properties

Length: 323aa MW: 36817.4 Da PI: 9.822

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022151327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.7	9e-16	62	121	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_022151327.1 62 SRFRGVSRHRWTGRFEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 121 789****************988855556447***********************98 PP
2	AP2	52.8	9.7e-17	164	215	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_022151327.1 164 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDMAAIEYRG 215 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MDFTVLNSDF CPIRSDSMAL KCKKRRRRST SSSTLLEGAA TSGDGPRHKS QTDRSTTTKR 60 SSRFRGVSRH RWTGRFEAHL WDKGSWNPTQ RKKGKQVYLG AYDEEESAAR AYDLAALKYW 120 GTSTFTNFPT SDYEEEVRIM KTMTKEEYLA SLRRXXXXXX XGVSKYRGVA RHHHNGRWEA 180 RIGRVFGNKY LYLGTYSTQE EAARAYDMAA IEYRGINAVT NFELSSYITW LKPHSQSHSH 240 HYNSSIFQHN IPLPDTATYL FQATAAATTT ADTSRTALGL LLKSSVFRDL LQKNVLNIDG 300 DQAEDQISMS PFHYTPLLTE GCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	26	LKCKKRR
2	23	28	KKRRRR
3	88	96	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-82	AP2 family protein