PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022150911.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 403aa MW: 45700.7 Da PI: 6.1267

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022150911.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.1e-18	97	143	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l XP_022150911.1 97 KGQWTEEEDRKLIRLVKQHGVRKWAQIAEKLE-GRAGKQCRERWHNHL 143 799***************************.***********97 PP
2	Myb_DNA-binding	50.3	5.4e-16	149	191	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE+ +lv+ +++ G++ W+ Ia+ ++ gRt++ +k++w+ XP_022150911.1 149 KESWSEEEERILVETHAKVGNR-WAEIAKSIP-GRTENAIKNHWN 191 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MQPPSGPPLA AIDRFLYGHQ LLHSCDDVDV IGGFPPDQSY CGGEWRRVXE EEEEEEIMYS 60 WGRSGANCNY ELMMENEGKI ISKGKKFKKG SSANLIKGQW TEEEDRKLIR LVKQHGVRKW 120 AQIAEKLEGR AGKQCRERWH NHLRPDIKKE SWSEEEERIL VETHAKVGNR WAEIAKSIPG 180 RTENAIKNHW NATKRRQNSR RKNKRPNSQN GKPHSSILQD YIKSKHNIPA PATATIVSDD 240 PSSHFNHFFP ESSDSTYNLS PAIISSPTYD DELLFMQNFF SNSTNPPPAH DAPMTVVDNQ 300 PAAEFVSIDS ELKMEKLKVG DEVDDLHRRS NTATGSCHLY SDLYLSYLLN GAANSSDGDE 360 LQNMMEMAEM EAAAAAGKGQ WQSSQEGKRE LDLIEMLSFH CYS

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MQPPSGPPLA AIDRFLYGHQ LLHSCDDVDV IGGFPPDQSY CGGEWRRVXE EEEEEEIMYS  60
WGRSGANCNY ELMMENEGKI ISKGKKFKKG SSANLIKGQW TEEEDRKLIR LVKQHGVRKW  120
AQIAEKLEGR AGKQCRERWH NHLRPDIKKE SWSEEEERIL VETHAKVGNR WAEIAKSIPG  180
RTENAIKNHW NATKRRQNSR RKNKRPNSQN GKPHSSILQD YIKSKHNIPA PATATIVSDD  240
PSSHFNHFFP ESSDSTYNLS PAIISSPTYD DELLFMQNFF SNSTNPPPAH DAPMTVVDNQ  300
PAAEFVSIDS ELKMEKLKVG DEVDDLHRRS NTATGSCHLY SDLYLSYLLN GAANSSDGDE  360
LQNMMEMAEM EAAAAAGKGQ WQSSQEGKRE LDLIEMLSFH CYS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	205	KRRQNSRRKNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	9e-63	MYB family protein