PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149296.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB_related

Protein Properties

Length: 611aa MW: 67199.3 Da PI: 5.637

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149296.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3.1e-08	491	539	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l XP_022149296.1 491 AWTLVEVIKLVEGVSKCGAGRWSEIKRLAFssySYRTSVDLKDKWRNLL 539 7*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
METVVGFVEN GGNIEEGRVA LDDSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE 60 DLIEDDKSEK IADAGQIVGC VPTEGLSQSE TFEADAGYNA RLEYIEEVLQ KVKEEERLRL 120 ACGSPNHASA YVNGDRKCSD QHGRLPVIDE KLQSKISQQE IAHSISPSLN ENHVNEHESL 180 GDCLKHPDEL VESESSDAVG TTSNPDFSLL KGEICLDNLS IRELHEYFRA TFGRETTVKD 240 KSWLKRRIAM GLTNSCDIPP SSFIIREGKF VAGGMEECSQ NVEGMSNVPL VKALNIECKG 300 SPTTHSWENK NHSCIADMEL DHGSKDRLDE ERAAVKRIRK PTRRYIEELS EVELREHGQK 360 GASLYKNAPS DGTSSSSIAR PIKKIISSDG GRTIITRMDT LGGSGFQVPC VSRVRRSRPR 420 KDIEALLFAP PDKDQNPSVK DTDQNTSVMD TEEVEKNLEP KLTASGNNAS DDNAAIVPTS 480 KGGMRRKHHR AWTLVEVIKL VEGVSKCGAG RWSEIKRLAF SSYSYRTSVD LKDKWRNLLK 540 ASSAQTPVDE VVSSRKHVSV SIPAQILLRV RELAEMHAQI ASNHHHGPAV AAAAAGVTPT 600 NMHEMTSAVC L

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

METVVGFVEN GGNIEEGRVA LDDSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE  60
DLIEDDKSEK IADAGQIVGC VPTEGLSQSE TFEADAGYNA RLEYIEEVLQ KVKEEERLRL  120
ACGSPNHASA YVNGDRKCSD QHGRLPVIDE KLQSKISQQE IAHSISPSLN ENHVNEHESL  180
GDCLKHPDEL VESESSDAVG TTSNPDFSLL KGEICLDNLS IRELHEYFRA TFGRETTVKD  240
KSWLKRRIAM GLTNSCDIPP SSFIIREGKF VAGGMEECSQ NVEGMSNVPL VKALNIECKG  300
SPTTHSWENK NHSCIADMEL DHGSKDRLDE ERAAVKRIRK PTRRYIEELS EVELREHGQK  360
GASLYKNAPS DGTSSSSIAR PIKKIISSDG GRTIITRMDT LGGSGFQVPC VSRVRRSRPR  420
KDIEALLFAP PDKDQNPSVK DTDQNTSVMD TEEVEKNLEP KLTASGNNAS DDNAAIVPTS  480
KGGMRRKHHR AWTLVEVIKL VEGVSKCGAG RWSEIKRLAF SSYSYRTSVD LKDKWRNLLK  540
ASSAQTPVDE VVSSRKHVSV SIPAQILLRV RELAEMHAQI ASNHHHGPAV AAAAAGVTPT  600
NMHEMTSAVC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	421	RRSRPRK
2	415	422	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-112	MYB_related family protein