PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022148799.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | C3H | ||||||||
Protein Properties | Length: 407aa MW: 46123.6 Da PI: 5.9598 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.2e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC++fa G C G+ C F+H+ XP_022148799.1 3 RRVLCKYFAH-GACLKGEYCEFSHD 26 689***6666.*************5 PP | |||||||
2 | zf-CCCH | 25.2 | 2.8e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C +G+rC++ H+ XP_022148799.1 34 VCTFYQK-GRCAFGSRCRYDHV 54 6******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence |
MSRRVLCKYF AHGACLKGEY CEFSHDWTDP SNNVCTFYQK GRCAFGSRCR YDHVKVSHAE 60 SSASSNSQQP IVSESVSVTR PLLSSQPSTL PGSTGELAGS EISCLPPQDE PAWGGQSEHH 120 PDDLDDWRDG ETRTDGPSDI PICSFIAGGG VCPRGENCPH IHGDICPTCG KQCLHPFRTD 180 EREEHMKACE KKQKHIEALK HSQDIECSVC LERVLSKSEL GERKFGILSE CDHPFCISCI 240 RNWRNSSSTS GMDVNNALRA CPICRKLSYF VIPSVIWYSS KEQKQEIVDS YKTRLRSIDC 300 KHFNFGNGNC PFGSSCFYKH WVKPGSYTWK YHRPPPRRPR SRRTPPSRSN IVDMDAFFDM 360 FEDLEDLDFS AEDLDMEDLS PLEMAFCLMQ LGCDFDNFSS DEENYSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-136 | C3H family protein |